Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3732 and EX28DRAFT_3733 are separated by 75 nucleotides EX28DRAFT_3733 and EX28DRAFT_3734 are separated by 59 nucleotides EX28DRAFT_3734 and EX28DRAFT_3735 are separated by 176 nucleotides
EX28DRAFT_3732: EX28DRAFT_3732 - poly(A) polymerase, at 406,581 to 407,945
_3732
EX28DRAFT_3733: EX28DRAFT_3733 - glutamyl-queuosine tRNA(Asp) synthetase, at 408,021 to 408,911
_3733
EX28DRAFT_3734: EX28DRAFT_3734 - transcriptional regulator, TraR/DksA family, at 408,971 to 409,426
_3734
EX28DRAFT_3735: EX28DRAFT_3735 - sugar fermentation stimulation protein, at 409,603 to 410,307
_3735
Position (kb) 408
409 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 407.910 kb on - strand at 407.991 kb on - strand at 407.991 kb on - strand at 408.025 kb on - strand at 408.138 kb on + strand, within EX28DRAFT_3733 at 408.268 kb on + strand, within EX28DRAFT_3733 at 408.299 kb on - strand, within EX28DRAFT_3733 at 408.306 kb on + strand, within EX28DRAFT_3733 at 408.307 kb on - strand, within EX28DRAFT_3733 at 408.396 kb on - strand, within EX28DRAFT_3733 at 408.397 kb on + strand, within EX28DRAFT_3733 at 408.397 kb on + strand, within EX28DRAFT_3733 at 408.398 kb on - strand, within EX28DRAFT_3733 at 408.398 kb on - strand, within EX28DRAFT_3733 at 408.428 kb on + strand, within EX28DRAFT_3733 at 408.429 kb on - strand, within EX28DRAFT_3733 at 408.429 kb on - strand, within EX28DRAFT_3733 at 408.515 kb on + strand, within EX28DRAFT_3733 at 408.515 kb on + strand, within EX28DRAFT_3733 at 408.515 kb on + strand, within EX28DRAFT_3733 at 408.516 kb on - strand, within EX28DRAFT_3733 at 408.520 kb on - strand, within EX28DRAFT_3733 at 408.616 kb on + strand, within EX28DRAFT_3733 at 408.616 kb on + strand, within EX28DRAFT_3733 at 408.616 kb on + strand, within EX28DRAFT_3733 at 408.617 kb on - strand, within EX28DRAFT_3733 at 408.823 kb on + strand at 408.843 kb on + strand at 408.859 kb on - strand at 408.859 kb on - strand at 408.894 kb on - strand at 408.895 kb on + strand at 408.896 kb on - strand at 408.896 kb on - strand at 408.911 kb on + strand at 408.911 kb on + strand at 408.911 kb on + strand at 408.957 kb on - strand at 408.969 kb on + strand at 408.970 kb on - strand at 409.487 kb on - strand at 409.487 kb on - strand at 409.487 kb on - strand at 409.487 kb on - strand at 409.491 kb on - strand at 409.491 kb on - strand at 409.517 kb on - strand at 409.521 kb on - strand at 409.521 kb on - strand at 409.526 kb on + strand at 409.527 kb on - strand at 409.604 kb on + strand at 409.606 kb on + strand at 409.607 kb on - strand at 409.607 kb on - strand at 409.607 kb on - strand at 409.639 kb on - strand at 409.639 kb on - strand at 409.639 kb on - strand at 409.662 kb on + strand at 409.720 kb on - strand, within EX28DRAFT_3735 at 409.816 kb on + strand, within EX28DRAFT_3735 at 409.817 kb on - strand, within EX28DRAFT_3735 at 409.910 kb on + strand, within EX28DRAFT_3735 at 409.911 kb on - strand, within EX28DRAFT_3735
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 407,910 - -0.3 407,991 - -0.3 407,991 - -1.5 408,025 - -0.5 408,138 + EX28DRAFT_3733 0.13 +0.1 408,268 + EX28DRAFT_3733 0.28 -0.4 408,299 - EX28DRAFT_3733 0.31 -0.1 408,306 + EX28DRAFT_3733 0.32 -0.1 408,307 - EX28DRAFT_3733 0.32 +0.6 408,396 - EX28DRAFT_3733 0.42 +0.2 408,397 + EX28DRAFT_3733 0.42 +0.6 408,397 + EX28DRAFT_3733 0.42 +0.3 408,398 - EX28DRAFT_3733 0.42 -0.5 408,398 - EX28DRAFT_3733 0.42 +0.2 408,428 + EX28DRAFT_3733 0.46 -0.6 408,429 - EX28DRAFT_3733 0.46 +0.2 408,429 - EX28DRAFT_3733 0.46 -0.1 408,515 + EX28DRAFT_3733 0.55 -1.0 408,515 + EX28DRAFT_3733 0.55 +1.1 408,515 + EX28DRAFT_3733 0.55 +1.0 408,516 - EX28DRAFT_3733 0.56 +0.3 408,520 - EX28DRAFT_3733 0.56 -0.1 408,616 + EX28DRAFT_3733 0.67 -2.9 408,616 + EX28DRAFT_3733 0.67 -0.3 408,616 + EX28DRAFT_3733 0.67 +0.5 408,617 - EX28DRAFT_3733 0.67 +0.2 408,823 + -0.3 408,843 + +0.7 408,859 - +0.4 408,859 - +0.8 408,894 - -0.7 408,895 + -0.6 408,896 - -0.2 408,896 - -0.7 408,911 + -0.4 408,911 + -1.2 408,911 + +0.8 408,957 - -1.8 408,969 + -0.9 408,970 - -1.7 409,487 - -3.5 409,487 - -2.6 409,487 - -1.5 409,487 - -0.8 409,491 - -1.2 409,491 - -2.0 409,517 - -0.7 409,521 - -0.2 409,521 - -0.2 409,526 + -1.5 409,527 - +0.4 409,604 + -1.6 409,606 + -1.5 409,607 - -0.2 409,607 - +0.1 409,607 - -0.1 409,639 - +0.6 409,639 - +0.9 409,639 - +0.5 409,662 + +1.1 409,720 - EX28DRAFT_3735 0.17 +0.8 409,816 + EX28DRAFT_3735 0.30 +1.0 409,817 - EX28DRAFT_3735 0.30 -0.7 409,910 + EX28DRAFT_3735 0.44 -0.2 409,911 - EX28DRAFT_3735 0.44 -0.3
Or see this region's nucleotide sequence