Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3727 and EX28DRAFT_3728 are separated by 3 nucleotides EX28DRAFT_3728 and EX28DRAFT_3729 are separated by 33 nucleotides EX28DRAFT_3729 and EX28DRAFT_3730 are separated by 11 nucleotides EX28DRAFT_3730 and EX28DRAFT_3731 are separated by 123 nucleotides
EX28DRAFT_3727: EX28DRAFT_3727 - Predicted xylanase/chitin deacetylase, at 402,662 to 403,909
_3727
EX28DRAFT_3728: EX28DRAFT_3728 - L-aspartate 1-decarboxylase (EC 4.1.1.11), at 403,913 to 404,293
_3728
EX28DRAFT_3729: EX28DRAFT_3729 - pantoate--beta-alanine ligase, at 404,327 to 405,178
_3729
EX28DRAFT_3730: EX28DRAFT_3730 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 405,190 to 405,981
_3730
EX28DRAFT_3731: EX28DRAFT_3731 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase, at 406,105 to 406,584
_3731
Position (kb) 404
405
406 Strain fitness (log2 ratio) -2
-1
0
1
2 at 403.328 kb on + strand, within EX28DRAFT_3727 at 403.344 kb on - strand, within EX28DRAFT_3727 at 403.388 kb on - strand, within EX28DRAFT_3727 at 403.421 kb on + strand, within EX28DRAFT_3727 at 403.445 kb on + strand, within EX28DRAFT_3727 at 403.469 kb on - strand, within EX28DRAFT_3727 at 403.471 kb on + strand, within EX28DRAFT_3727 at 403.472 kb on - strand, within EX28DRAFT_3727 at 403.472 kb on - strand, within EX28DRAFT_3727 at 403.602 kb on + strand, within EX28DRAFT_3727 at 403.602 kb on + strand, within EX28DRAFT_3727 at 403.610 kb on + strand, within EX28DRAFT_3727 at 403.612 kb on + strand, within EX28DRAFT_3727 at 403.613 kb on - strand, within EX28DRAFT_3727 at 403.626 kb on + strand, within EX28DRAFT_3727 at 403.693 kb on + strand, within EX28DRAFT_3727 at 403.710 kb on - strand, within EX28DRAFT_3727 at 403.741 kb on + strand, within EX28DRAFT_3727 at 403.844 kb on + strand at 403.851 kb on + strand at 403.851 kb on + strand at 404.096 kb on - strand, within EX28DRAFT_3728 at 404.122 kb on - strand, within EX28DRAFT_3728 at 404.159 kb on - strand, within EX28DRAFT_3728 at 404.230 kb on - strand, within EX28DRAFT_3728 at 404.269 kb on + strand at 404.269 kb on + strand at 404.270 kb on - strand at 404.270 kb on - strand at 404.301 kb on - strand at 404.329 kb on - strand at 404.357 kb on + strand at 404.503 kb on + strand, within EX28DRAFT_3729 at 404.504 kb on - strand, within EX28DRAFT_3729 at 404.646 kb on - strand, within EX28DRAFT_3729 at 404.856 kb on + strand, within EX28DRAFT_3729 at 404.856 kb on + strand, within EX28DRAFT_3729 at 404.857 kb on - strand, within EX28DRAFT_3729 at 405.016 kb on + strand, within EX28DRAFT_3729 at 405.017 kb on - strand, within EX28DRAFT_3729 at 405.031 kb on + strand, within EX28DRAFT_3729 at 405.068 kb on - strand, within EX28DRAFT_3729 at 405.110 kb on - strand at 405.110 kb on - strand at 405.116 kb on - strand at 405.243 kb on + strand at 405.243 kb on + strand at 405.244 kb on - strand at 405.245 kb on + strand at 405.246 kb on - strand at 405.246 kb on - strand at 405.414 kb on + strand, within EX28DRAFT_3730 at 405.531 kb on + strand, within EX28DRAFT_3730 at 405.531 kb on + strand, within EX28DRAFT_3730 at 405.531 kb on + strand, within EX28DRAFT_3730 at 405.531 kb on + strand, within EX28DRAFT_3730 at 405.531 kb on + strand, within EX28DRAFT_3730 at 405.534 kb on - strand, within EX28DRAFT_3730 at 405.778 kb on - strand, within EX28DRAFT_3730 at 405.902 kb on + strand at 405.903 kb on - strand at 405.909 kb on - strand at 405.959 kb on - strand at 405.981 kb on + strand at 406.029 kb on - strand at 406.052 kb on + strand at 406.052 kb on + strand at 406.052 kb on + strand at 406.053 kb on - strand at 406.053 kb on - strand at 406.056 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 403,328 + EX28DRAFT_3727 0.53 +0.3 403,344 - EX28DRAFT_3727 0.55 +0.4 403,388 - EX28DRAFT_3727 0.58 +0.3 403,421 + EX28DRAFT_3727 0.61 -0.0 403,445 + EX28DRAFT_3727 0.63 +1.2 403,469 - EX28DRAFT_3727 0.65 -0.6 403,471 + EX28DRAFT_3727 0.65 -0.3 403,472 - EX28DRAFT_3727 0.65 -0.7 403,472 - EX28DRAFT_3727 0.65 +0.1 403,602 + EX28DRAFT_3727 0.75 -2.0 403,602 + EX28DRAFT_3727 0.75 +0.2 403,610 + EX28DRAFT_3727 0.76 -0.1 403,612 + EX28DRAFT_3727 0.76 +0.0 403,613 - EX28DRAFT_3727 0.76 +0.2 403,626 + EX28DRAFT_3727 0.77 +0.3 403,693 + EX28DRAFT_3727 0.83 +2.2 403,710 - EX28DRAFT_3727 0.84 -0.1 403,741 + EX28DRAFT_3727 0.86 -0.3 403,844 + +0.1 403,851 + +0.4 403,851 + -0.1 404,096 - EX28DRAFT_3728 0.48 +0.1 404,122 - EX28DRAFT_3728 0.55 -0.2 404,159 - EX28DRAFT_3728 0.65 -1.3 404,230 - EX28DRAFT_3728 0.83 -1.5 404,269 + -0.9 404,269 + -1.7 404,270 - -0.1 404,270 - -0.1 404,301 - -1.0 404,329 - -0.4 404,357 + -1.6 404,503 + EX28DRAFT_3729 0.21 -1.9 404,504 - EX28DRAFT_3729 0.21 -1.0 404,646 - EX28DRAFT_3729 0.37 -2.3 404,856 + EX28DRAFT_3729 0.62 -1.5 404,856 + EX28DRAFT_3729 0.62 -1.6 404,857 - EX28DRAFT_3729 0.62 -0.3 405,016 + EX28DRAFT_3729 0.81 -1.5 405,017 - EX28DRAFT_3729 0.81 -1.2 405,031 + EX28DRAFT_3729 0.83 -0.9 405,068 - EX28DRAFT_3729 0.87 -0.6 405,110 - -1.0 405,110 - -1.1 405,116 - -0.6 405,243 + -1.7 405,243 + -1.5 405,244 - -2.6 405,245 + -2.3 405,246 - -1.0 405,246 - +0.4 405,414 + EX28DRAFT_3730 0.28 +0.1 405,531 + EX28DRAFT_3730 0.43 +1.1 405,531 + EX28DRAFT_3730 0.43 +0.2 405,531 + EX28DRAFT_3730 0.43 -1.0 405,531 + EX28DRAFT_3730 0.43 -2.7 405,531 + EX28DRAFT_3730 0.43 +1.3 405,534 - EX28DRAFT_3730 0.43 -0.4 405,778 - EX28DRAFT_3730 0.74 -1.0 405,902 + -1.3 405,903 - -1.0 405,909 - -0.6 405,959 - -0.3 405,981 + -0.9 406,029 - +0.5 406,052 + -0.4 406,052 + -0.0 406,052 + +0.3 406,053 - -0.0 406,053 - +0.8 406,056 + +0.5
Or see this region's nucleotide sequence