Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3707

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3706 and EX28DRAFT_3707 are separated by 164 nucleotidesEX28DRAFT_3707 and EX28DRAFT_3708 are separated by 536 nucleotides EX28DRAFT_3706: EX28DRAFT_3706 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 375,890 to 377,287 _3706 EX28DRAFT_3707: EX28DRAFT_3707 - Gamma-aminobutyrate permease and related permeases, at 377,452 to 378,822 _3707 EX28DRAFT_3708: EX28DRAFT_3708 - Transcriptional regulators, at 379,359 to 380,123 _3708 Position (kb) 377 378 379Strain fitness (log2 ratio) -2 -1 0 1 2at 376.477 kb on + strand, within EX28DRAFT_3706at 376.525 kb on - strand, within EX28DRAFT_3706at 376.525 kb on - strand, within EX28DRAFT_3706at 376.527 kb on + strand, within EX28DRAFT_3706at 376.527 kb on + strand, within EX28DRAFT_3706at 376.527 kb on + strand, within EX28DRAFT_3706at 376.528 kb on - strand, within EX28DRAFT_3706at 376.528 kb on - strand, within EX28DRAFT_3706at 376.528 kb on - strand, within EX28DRAFT_3706at 376.528 kb on - strand, within EX28DRAFT_3706at 376.889 kb on + strand, within EX28DRAFT_3706at 376.889 kb on + strand, within EX28DRAFT_3706at 376.899 kb on + strand, within EX28DRAFT_3706at 376.899 kb on + strand, within EX28DRAFT_3706at 376.899 kb on + strand, within EX28DRAFT_3706at 376.899 kb on + strand, within EX28DRAFT_3706at 376.920 kb on + strand, within EX28DRAFT_3706at 376.921 kb on - strand, within EX28DRAFT_3706at 376.942 kb on - strand, within EX28DRAFT_3706at 376.942 kb on - strand, within EX28DRAFT_3706at 376.957 kb on - strand, within EX28DRAFT_3706at 376.960 kb on + strand, within EX28DRAFT_3706at 376.972 kb on + strand, within EX28DRAFT_3706at 376.972 kb on + strand, within EX28DRAFT_3706at 376.974 kb on + strand, within EX28DRAFT_3706at 376.974 kb on + strand, within EX28DRAFT_3706at 377.066 kb on - strand, within EX28DRAFT_3706at 377.095 kb on + strand, within EX28DRAFT_3706at 377.120 kb on + strand, within EX28DRAFT_3706at 377.182 kb on - strandat 377.339 kb on + strandat 377.339 kb on + strandat 377.340 kb on - strandat 377.341 kb on + strandat 377.341 kb on + strandat 377.341 kb on + strandat 377.342 kb on - strandat 377.453 kb on + strandat 377.453 kb on + strandat 377.467 kb on - strandat 377.472 kb on + strandat 377.535 kb on - strandat 377.769 kb on + strand, within EX28DRAFT_3707at 377.770 kb on - strand, within EX28DRAFT_3707at 377.771 kb on + strand, within EX28DRAFT_3707at 377.771 kb on + strand, within EX28DRAFT_3707at 377.772 kb on - strand, within EX28DRAFT_3707at 377.772 kb on - strand, within EX28DRAFT_3707at 377.772 kb on - strand, within EX28DRAFT_3707at 377.772 kb on - strand, within EX28DRAFT_3707at 377.775 kb on + strand, within EX28DRAFT_3707at 377.914 kb on + strand, within EX28DRAFT_3707at 377.914 kb on + strand, within EX28DRAFT_3707at 377.914 kb on + strand, within EX28DRAFT_3707at 377.915 kb on - strand, within EX28DRAFT_3707at 377.915 kb on - strand, within EX28DRAFT_3707at 377.975 kb on - strand, within EX28DRAFT_3707at 378.080 kb on + strand, within EX28DRAFT_3707at 378.080 kb on + strand, within EX28DRAFT_3707at 378.080 kb on + strand, within EX28DRAFT_3707at 378.081 kb on - strand, within EX28DRAFT_3707at 378.081 kb on - strand, within EX28DRAFT_3707at 378.215 kb on - strand, within EX28DRAFT_3707at 378.349 kb on - strand, within EX28DRAFT_3707at 378.349 kb on - strand, within EX28DRAFT_3707at 378.414 kb on + strand, within EX28DRAFT_3707at 378.414 kb on + strand, within EX28DRAFT_3707at 378.477 kb on - strand, within EX28DRAFT_3707at 378.477 kb on - strand, within EX28DRAFT_3707at 378.518 kb on + strand, within EX28DRAFT_3707at 378.531 kb on - strand, within EX28DRAFT_3707at 378.569 kb on + strand, within EX28DRAFT_3707at 378.570 kb on - strand, within EX28DRAFT_3707at 378.576 kb on - strand, within EX28DRAFT_3707at 378.655 kb on - strand, within EX28DRAFT_3707at 378.766 kb on + strandat 378.766 kb on + strandat 378.766 kb on + strandat 378.766 kb on + strandat 378.766 kb on + strandat 378.767 kb on - strandat 378.767 kb on - strandat 378.767 kb on - strandat 378.767 kb on - strandat 378.767 kb on - strandat 378.767 kb on - strandat 378.767 kb on - strandat 378.768 kb on + strandat 378.768 kb on + strandat 378.768 kb on + strandat 378.769 kb on - strandat 378.769 kb on - strandat 378.836 kb on + strandat 378.845 kb on + strandat 378.846 kb on - strandat 378.846 kb on - strandat 378.866 kb on + strandat 378.867 kb on - strandat 378.888 kb on + strandat 378.888 kb on + strandat 378.889 kb on - strandat 378.889 kb on - strandat 378.940 kb on - strandat 379.024 kb on + strandat 379.059 kb on + strandat 379.060 kb on - strandat 379.077 kb on + strandat 379.163 kb on - strandat 379.169 kb on + strandat 379.216 kb on + strandat 379.288 kb on + strandat 379.390 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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376,477 + EX28DRAFT_3706 0.42 -0.1
376,525 - EX28DRAFT_3706 0.45 -0.0
376,525 - EX28DRAFT_3706 0.45 -0.1
376,527 + EX28DRAFT_3706 0.46 +0.1
376,527 + EX28DRAFT_3706 0.46 -0.2
376,527 + EX28DRAFT_3706 0.46 +0.2
376,528 - EX28DRAFT_3706 0.46 +0.3
376,528 - EX28DRAFT_3706 0.46 -0.6
376,528 - EX28DRAFT_3706 0.46 +0.2
376,528 - EX28DRAFT_3706 0.46 +0.0
376,889 + EX28DRAFT_3706 0.71 +0.3
376,889 + EX28DRAFT_3706 0.71 -0.7
376,899 + EX28DRAFT_3706 0.72 -0.4
376,899 + EX28DRAFT_3706 0.72 -0.3
376,899 + EX28DRAFT_3706 0.72 +0.4
376,899 + EX28DRAFT_3706 0.72 +0.0
376,920 + EX28DRAFT_3706 0.74 +0.3
376,921 - EX28DRAFT_3706 0.74 -0.9
376,942 - EX28DRAFT_3706 0.75 +0.3
376,942 - EX28DRAFT_3706 0.75 -0.5
376,957 - EX28DRAFT_3706 0.76 +0.1
376,960 + EX28DRAFT_3706 0.77 -0.4
376,972 + EX28DRAFT_3706 0.77 +0.1
376,972 + EX28DRAFT_3706 0.77 +0.0
376,974 + EX28DRAFT_3706 0.78 -0.2
376,974 + EX28DRAFT_3706 0.78 -2.1
377,066 - EX28DRAFT_3706 0.84 +1.0
377,095 + EX28DRAFT_3706 0.86 -0.3
377,120 + EX28DRAFT_3706 0.88 +0.9
377,182 - -0.7
377,339 + +0.1
377,339 + -0.3
377,340 - +1.8
377,341 + +0.3
377,341 + +0.7
377,341 + +0.7
377,342 - +1.0
377,453 + -0.2
377,453 + +0.5
377,467 - +0.1
377,472 + +0.3
377,535 - +0.4
377,769 + EX28DRAFT_3707 0.23 +0.1
377,770 - EX28DRAFT_3707 0.23 +1.6
377,771 + EX28DRAFT_3707 0.23 +0.2
377,771 + EX28DRAFT_3707 0.23 -0.2
377,772 - EX28DRAFT_3707 0.23 -0.6
377,772 - EX28DRAFT_3707 0.23 +0.9
377,772 - EX28DRAFT_3707 0.23 +0.1
377,772 - EX28DRAFT_3707 0.23 +0.4
377,775 + EX28DRAFT_3707 0.24 +0.5
377,914 + EX28DRAFT_3707 0.34 +0.5
377,914 + EX28DRAFT_3707 0.34 -1.9
377,914 + EX28DRAFT_3707 0.34 +0.3
377,915 - EX28DRAFT_3707 0.34 +1.3
377,915 - EX28DRAFT_3707 0.34 +1.2
377,975 - EX28DRAFT_3707 0.38 +0.5
378,080 + EX28DRAFT_3707 0.46 +0.3
378,080 + EX28DRAFT_3707 0.46 +0.6
378,080 + EX28DRAFT_3707 0.46 +0.6
378,081 - EX28DRAFT_3707 0.46 +0.3
378,081 - EX28DRAFT_3707 0.46 +0.4
378,215 - EX28DRAFT_3707 0.56 -0.0
378,349 - EX28DRAFT_3707 0.65 +0.3
378,349 - EX28DRAFT_3707 0.65 +0.3
378,414 + EX28DRAFT_3707 0.70 -0.7
378,414 + EX28DRAFT_3707 0.70 +1.2
378,477 - EX28DRAFT_3707 0.75 -0.5
378,477 - EX28DRAFT_3707 0.75 +0.3
378,518 + EX28DRAFT_3707 0.78 +0.4
378,531 - EX28DRAFT_3707 0.79 +0.4
378,569 + EX28DRAFT_3707 0.81 +0.9
378,570 - EX28DRAFT_3707 0.82 +1.2
378,576 - EX28DRAFT_3707 0.82 +1.9
378,655 - EX28DRAFT_3707 0.88 -2.2
378,766 + +0.8
378,766 + +0.2
378,766 + +0.3
378,766 + +0.1
378,766 + +0.7
378,767 - +0.1
378,767 - +0.7
378,767 - +0.7
378,767 - -1.0
378,767 - +0.6
378,767 - +0.2
378,767 - +0.5
378,768 + +0.6
378,768 + +0.6
378,768 + +0.6
378,769 - +0.5
378,769 - -0.9
378,836 + +0.9
378,845 + +0.1
378,846 - -0.4
378,846 - +0.3
378,866 + +0.5
378,867 - -0.6
378,888 + -0.3
378,888 + +2.4
378,889 - -0.3
378,889 - -0.3
378,940 - +0.7
379,024 + -0.6
379,059 + +0.2
379,060 - -0.3
379,077 + -0.2
379,163 - +0.3
379,169 + -0.2
379,216 + +0.1
379,288 + -0.2
379,390 + -1.1

Or see this region's nucleotide sequence