Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3668 and EX28DRAFT_3669 are separated by 2 nucleotides EX28DRAFT_3669 and EX28DRAFT_3670 overlap by 1 nucleotides
EX28DRAFT_3668: EX28DRAFT_3668 - 3-isopropylmalate dehydratase, large subunit, at 334,392 to 335,792
_3668
EX28DRAFT_3669: EX28DRAFT_3669 - 3-isopropylmalate dehydrogenase, at 335,795 to 336,886
_3669
EX28DRAFT_3670: EX28DRAFT_3670 - 2-isopropylmalate synthase (EC 2.3.3.13), at 336,886 to 338,457
_3670
Position (kb) 335
336
337 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 334.819 kb on + strand, within EX28DRAFT_3668 at 334.819 kb on + strand, within EX28DRAFT_3668 at 334.819 kb on + strand, within EX28DRAFT_3668 at 334.819 kb on + strand, within EX28DRAFT_3668 at 334.819 kb on + strand, within EX28DRAFT_3668 at 334.819 kb on + strand, within EX28DRAFT_3668 at 334.819 kb on + strand, within EX28DRAFT_3668 at 335.068 kb on + strand, within EX28DRAFT_3668 at 335.068 kb on + strand, within EX28DRAFT_3668 at 335.130 kb on - strand, within EX28DRAFT_3668 at 335.501 kb on - strand, within EX28DRAFT_3668 at 335.716 kb on + strand at 335.747 kb on - strand at 335.776 kb on + strand at 335.776 kb on + strand at 335.776 kb on + strand at 335.778 kb on + strand at 335.779 kb on - strand at 335.787 kb on - strand at 335.796 kb on + strand at 335.796 kb on + strand at 335.797 kb on - strand at 335.815 kb on - strand at 336.213 kb on + strand, within EX28DRAFT_3669 at 336.213 kb on + strand, within EX28DRAFT_3669 at 336.213 kb on + strand, within EX28DRAFT_3669 at 336.213 kb on + strand, within EX28DRAFT_3669 at 336.213 kb on + strand, within EX28DRAFT_3669 at 336.214 kb on - strand, within EX28DRAFT_3669 at 336.323 kb on - strand, within EX28DRAFT_3669 at 336.323 kb on - strand, within EX28DRAFT_3669 at 336.388 kb on - strand, within EX28DRAFT_3669 at 336.388 kb on - strand, within EX28DRAFT_3669 at 336.388 kb on - strand, within EX28DRAFT_3669 at 336.760 kb on - strand, within EX28DRAFT_3669 at 336.869 kb on - strand at 336.874 kb on - strand at 337.112 kb on + strand, within EX28DRAFT_3670 at 337.160 kb on + strand, within EX28DRAFT_3670 at 337.161 kb on - strand, within EX28DRAFT_3670 at 337.161 kb on - strand, within EX28DRAFT_3670 at 337.274 kb on + strand, within EX28DRAFT_3670 at 337.315 kb on - strand, within EX28DRAFT_3670 at 337.419 kb on + strand, within EX28DRAFT_3670 at 337.419 kb on + strand, within EX28DRAFT_3670 at 337.421 kb on + strand, within EX28DRAFT_3670 at 337.421 kb on + strand, within EX28DRAFT_3670 at 337.421 kb on + strand, within EX28DRAFT_3670 at 337.421 kb on + strand, within EX28DRAFT_3670 at 337.438 kb on - strand, within EX28DRAFT_3670 at 337.486 kb on + strand, within EX28DRAFT_3670 at 337.486 kb on + strand, within EX28DRAFT_3670 at 337.695 kb on + strand, within EX28DRAFT_3670 at 337.762 kb on + strand, within EX28DRAFT_3670 at 337.765 kb on - strand, within EX28DRAFT_3670 at 337.821 kb on + strand, within EX28DRAFT_3670 at 337.864 kb on - strand, within EX28DRAFT_3670
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 334,819 + EX28DRAFT_3668 0.30 -0.7 334,819 + EX28DRAFT_3668 0.30 -2.0 334,819 + EX28DRAFT_3668 0.30 -2.2 334,819 + EX28DRAFT_3668 0.30 -0.1 334,819 + EX28DRAFT_3668 0.30 -1.8 334,819 + EX28DRAFT_3668 0.30 -1.4 334,819 + EX28DRAFT_3668 0.30 -1.3 335,068 + EX28DRAFT_3668 0.48 -1.7 335,068 + EX28DRAFT_3668 0.48 -1.9 335,130 - EX28DRAFT_3668 0.53 -0.9 335,501 - EX28DRAFT_3668 0.79 -1.4 335,716 + -1.6 335,747 - +0.7 335,776 + +0.0 335,776 + -1.2 335,776 + -1.4 335,778 + -1.8 335,779 - -1.8 335,787 - -1.9 335,796 + -2.1 335,796 + -1.5 335,797 - -0.7 335,815 - -4.1 336,213 + EX28DRAFT_3669 0.38 -0.1 336,213 + EX28DRAFT_3669 0.38 -0.8 336,213 + EX28DRAFT_3669 0.38 -1.1 336,213 + EX28DRAFT_3669 0.38 -1.0 336,213 + EX28DRAFT_3669 0.38 -2.2 336,214 - EX28DRAFT_3669 0.38 -0.8 336,323 - EX28DRAFT_3669 0.48 -1.0 336,323 - EX28DRAFT_3669 0.48 -1.7 336,388 - EX28DRAFT_3669 0.54 -1.5 336,388 - EX28DRAFT_3669 0.54 -2.2 336,388 - EX28DRAFT_3669 0.54 -2.0 336,760 - EX28DRAFT_3669 0.88 -1.1 336,869 - -1.1 336,874 - -1.0 337,112 + EX28DRAFT_3670 0.14 +0.9 337,160 + EX28DRAFT_3670 0.17 +0.9 337,161 - EX28DRAFT_3670 0.17 +1.9 337,161 - EX28DRAFT_3670 0.17 -0.3 337,274 + EX28DRAFT_3670 0.25 -0.4 337,315 - EX28DRAFT_3670 0.27 +0.3 337,419 + EX28DRAFT_3670 0.34 -0.8 337,419 + EX28DRAFT_3670 0.34 -0.9 337,421 + EX28DRAFT_3670 0.34 -1.9 337,421 + EX28DRAFT_3670 0.34 -0.5 337,421 + EX28DRAFT_3670 0.34 -0.8 337,421 + EX28DRAFT_3670 0.34 -0.1 337,438 - EX28DRAFT_3670 0.35 +0.1 337,486 + EX28DRAFT_3670 0.38 -0.5 337,486 + EX28DRAFT_3670 0.38 -0.4 337,695 + EX28DRAFT_3670 0.51 -0.6 337,762 + EX28DRAFT_3670 0.56 -2.0 337,765 - EX28DRAFT_3670 0.56 -0.1 337,821 + EX28DRAFT_3670 0.59 +1.8 337,864 - EX28DRAFT_3670 0.62 -0.8
Or see this region's nucleotide sequence