Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3666 and EX28DRAFT_3667 are separated by 162 nucleotides EX28DRAFT_3667 and EX28DRAFT_3668 are separated by 10 nucleotides EX28DRAFT_3668 and EX28DRAFT_3669 are separated by 2 nucleotides
EX28DRAFT_3666: EX28DRAFT_3666 - cation diffusion facilitator family transporter, at 332,723 to 333,613
_3666
EX28DRAFT_3667: EX28DRAFT_3667 - 3-isopropylmalate dehydratase, small subunit, at 333,776 to 334,381
_3667
EX28DRAFT_3668: EX28DRAFT_3668 - 3-isopropylmalate dehydratase, large subunit, at 334,392 to 335,792
_3668
EX28DRAFT_3669: EX28DRAFT_3669 - 3-isopropylmalate dehydrogenase, at 335,795 to 336,886
_3669
Position (kb)
334
335
336 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 333.413 kb on - strand, within EX28DRAFT_3666 at 333.444 kb on - strand, within EX28DRAFT_3666 at 333.498 kb on - strand, within EX28DRAFT_3666 at 333.536 kb on + strand at 333.558 kb on + strand at 333.558 kb on + strand at 333.558 kb on + strand at 333.559 kb on - strand at 333.563 kb on - strand at 333.566 kb on + strand at 333.675 kb on + strand at 333.675 kb on + strand at 333.710 kb on + strand at 333.711 kb on - strand at 333.714 kb on + strand at 333.715 kb on - strand at 333.903 kb on + strand, within EX28DRAFT_3667 at 334.095 kb on + strand, within EX28DRAFT_3667 at 334.306 kb on + strand, within EX28DRAFT_3667 at 334.307 kb on - strand, within EX28DRAFT_3667 at 334.309 kb on + strand, within EX28DRAFT_3667 at 334.357 kb on + strand at 334.357 kb on + strand at 334.357 kb on + strand at 334.393 kb on + strand at 334.394 kb on - strand at 334.503 kb on - strand at 334.666 kb on - strand, within EX28DRAFT_3668 at 334.666 kb on - strand, within EX28DRAFT_3668 at 334.772 kb on + strand, within EX28DRAFT_3668 at 334.772 kb on + strand, within EX28DRAFT_3668 at 334.819 kb on + strand, within EX28DRAFT_3668 at 334.819 kb on + strand, within EX28DRAFT_3668 at 334.819 kb on + strand, within EX28DRAFT_3668 at 334.819 kb on + strand, within EX28DRAFT_3668 at 334.819 kb on + strand, within EX28DRAFT_3668 at 334.819 kb on + strand, within EX28DRAFT_3668 at 334.819 kb on + strand, within EX28DRAFT_3668 at 335.068 kb on + strand, within EX28DRAFT_3668 at 335.068 kb on + strand, within EX28DRAFT_3668 at 335.130 kb on - strand, within EX28DRAFT_3668 at 335.501 kb on - strand, within EX28DRAFT_3668 at 335.716 kb on + strand at 335.747 kb on - strand at 335.776 kb on + strand at 335.776 kb on + strand at 335.776 kb on + strand at 335.778 kb on + strand at 335.779 kb on - strand at 335.787 kb on - strand at 335.796 kb on + strand at 335.796 kb on + strand at 335.797 kb on - strand at 335.815 kb on - strand at 336.213 kb on + strand, within EX28DRAFT_3669 at 336.213 kb on + strand, within EX28DRAFT_3669 at 336.213 kb on + strand, within EX28DRAFT_3669 at 336.213 kb on + strand, within EX28DRAFT_3669 at 336.213 kb on + strand, within EX28DRAFT_3669 at 336.214 kb on - strand, within EX28DRAFT_3669 at 336.323 kb on - strand, within EX28DRAFT_3669 at 336.323 kb on - strand, within EX28DRAFT_3669 at 336.388 kb on - strand, within EX28DRAFT_3669 at 336.388 kb on - strand, within EX28DRAFT_3669 at 336.388 kb on - strand, within EX28DRAFT_3669 at 336.760 kb on - strand, within EX28DRAFT_3669
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 333,413 - EX28DRAFT_3666 0.77 +0.2 333,444 - EX28DRAFT_3666 0.81 -0.3 333,498 - EX28DRAFT_3666 0.87 +1.2 333,536 + +0.2 333,558 + +0.3 333,558 + -0.6 333,558 + +0.3 333,559 - -1.8 333,563 - -0.8 333,566 + -0.2 333,675 + -0.5 333,675 + +0.2 333,710 + -0.9 333,711 - -0.8 333,714 + -1.8 333,715 - +0.1 333,903 + EX28DRAFT_3667 0.21 -3.0 334,095 + EX28DRAFT_3667 0.53 -2.2 334,306 + EX28DRAFT_3667 0.87 -2.9 334,307 - EX28DRAFT_3667 0.88 -1.4 334,309 + EX28DRAFT_3667 0.88 -1.6 334,357 + -2.5 334,357 + -1.8 334,357 + -2.3 334,393 + -0.5 334,394 - -0.3 334,503 - -1.2 334,666 - EX28DRAFT_3668 0.20 -0.4 334,666 - EX28DRAFT_3668 0.20 -0.4 334,772 + EX28DRAFT_3668 0.27 -0.5 334,772 + EX28DRAFT_3668 0.27 -1.3 334,819 + EX28DRAFT_3668 0.30 -0.7 334,819 + EX28DRAFT_3668 0.30 -2.0 334,819 + EX28DRAFT_3668 0.30 -2.2 334,819 + EX28DRAFT_3668 0.30 -0.1 334,819 + EX28DRAFT_3668 0.30 -1.8 334,819 + EX28DRAFT_3668 0.30 -1.4 334,819 + EX28DRAFT_3668 0.30 -1.3 335,068 + EX28DRAFT_3668 0.48 -1.7 335,068 + EX28DRAFT_3668 0.48 -1.9 335,130 - EX28DRAFT_3668 0.53 -0.9 335,501 - EX28DRAFT_3668 0.79 -1.4 335,716 + -1.6 335,747 - +0.7 335,776 + +0.0 335,776 + -1.2 335,776 + -1.4 335,778 + -1.8 335,779 - -1.8 335,787 - -1.9 335,796 + -2.1 335,796 + -1.5 335,797 - -0.7 335,815 - -4.1 336,213 + EX28DRAFT_3669 0.38 -0.1 336,213 + EX28DRAFT_3669 0.38 -0.8 336,213 + EX28DRAFT_3669 0.38 -1.1 336,213 + EX28DRAFT_3669 0.38 -1.0 336,213 + EX28DRAFT_3669 0.38 -2.2 336,214 - EX28DRAFT_3669 0.38 -0.8 336,323 - EX28DRAFT_3669 0.48 -1.0 336,323 - EX28DRAFT_3669 0.48 -1.7 336,388 - EX28DRAFT_3669 0.54 -1.5 336,388 - EX28DRAFT_3669 0.54 -2.2 336,388 - EX28DRAFT_3669 0.54 -2.0 336,760 - EX28DRAFT_3669 0.88 -1.1
Or see this region's nucleotide sequence