Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3668

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3666 and EX28DRAFT_3667 are separated by 162 nucleotidesEX28DRAFT_3667 and EX28DRAFT_3668 are separated by 10 nucleotidesEX28DRAFT_3668 and EX28DRAFT_3669 are separated by 2 nucleotides EX28DRAFT_3666: EX28DRAFT_3666 - cation diffusion facilitator family transporter, at 332,723 to 333,613 _3666 EX28DRAFT_3667: EX28DRAFT_3667 - 3-isopropylmalate dehydratase, small subunit, at 333,776 to 334,381 _3667 EX28DRAFT_3668: EX28DRAFT_3668 - 3-isopropylmalate dehydratase, large subunit, at 334,392 to 335,792 _3668 EX28DRAFT_3669: EX28DRAFT_3669 - 3-isopropylmalate dehydrogenase, at 335,795 to 336,886 _3669 Position (kb) 334 335 336Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 333.413 kb on - strand, within EX28DRAFT_3666at 333.444 kb on - strand, within EX28DRAFT_3666at 333.498 kb on - strand, within EX28DRAFT_3666at 333.536 kb on + strandat 333.558 kb on + strandat 333.558 kb on + strandat 333.558 kb on + strandat 333.559 kb on - strandat 333.563 kb on - strandat 333.566 kb on + strandat 333.675 kb on + strandat 333.675 kb on + strandat 333.710 kb on + strandat 333.711 kb on - strandat 333.714 kb on + strandat 333.715 kb on - strandat 333.903 kb on + strand, within EX28DRAFT_3667at 334.095 kb on + strand, within EX28DRAFT_3667at 334.306 kb on + strand, within EX28DRAFT_3667at 334.307 kb on - strand, within EX28DRAFT_3667at 334.309 kb on + strand, within EX28DRAFT_3667at 334.357 kb on + strandat 334.357 kb on + strandat 334.357 kb on + strandat 334.393 kb on + strandat 334.394 kb on - strandat 334.503 kb on - strandat 334.666 kb on - strand, within EX28DRAFT_3668at 334.666 kb on - strand, within EX28DRAFT_3668at 334.772 kb on + strand, within EX28DRAFT_3668at 334.772 kb on + strand, within EX28DRAFT_3668at 334.819 kb on + strand, within EX28DRAFT_3668at 334.819 kb on + strand, within EX28DRAFT_3668at 334.819 kb on + strand, within EX28DRAFT_3668at 334.819 kb on + strand, within EX28DRAFT_3668at 334.819 kb on + strand, within EX28DRAFT_3668at 334.819 kb on + strand, within EX28DRAFT_3668at 334.819 kb on + strand, within EX28DRAFT_3668at 335.068 kb on + strand, within EX28DRAFT_3668at 335.068 kb on + strand, within EX28DRAFT_3668at 335.130 kb on - strand, within EX28DRAFT_3668at 335.501 kb on - strand, within EX28DRAFT_3668at 335.716 kb on + strandat 335.747 kb on - strandat 335.776 kb on + strandat 335.776 kb on + strandat 335.776 kb on + strandat 335.778 kb on + strandat 335.779 kb on - strandat 335.787 kb on - strandat 335.796 kb on + strandat 335.796 kb on + strandat 335.797 kb on - strandat 335.815 kb on - strandat 336.213 kb on + strand, within EX28DRAFT_3669at 336.213 kb on + strand, within EX28DRAFT_3669at 336.213 kb on + strand, within EX28DRAFT_3669at 336.213 kb on + strand, within EX28DRAFT_3669at 336.213 kb on + strand, within EX28DRAFT_3669at 336.214 kb on - strand, within EX28DRAFT_3669at 336.323 kb on - strand, within EX28DRAFT_3669at 336.323 kb on - strand, within EX28DRAFT_3669at 336.388 kb on - strand, within EX28DRAFT_3669at 336.388 kb on - strand, within EX28DRAFT_3669at 336.388 kb on - strand, within EX28DRAFT_3669at 336.760 kb on - strand, within EX28DRAFT_3669

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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333,413 - EX28DRAFT_3666 0.77 +0.2
333,444 - EX28DRAFT_3666 0.81 -0.3
333,498 - EX28DRAFT_3666 0.87 +1.2
333,536 + +0.2
333,558 + +0.3
333,558 + -0.6
333,558 + +0.3
333,559 - -1.8
333,563 - -0.8
333,566 + -0.2
333,675 + -0.5
333,675 + +0.2
333,710 + -0.9
333,711 - -0.8
333,714 + -1.8
333,715 - +0.1
333,903 + EX28DRAFT_3667 0.21 -3.0
334,095 + EX28DRAFT_3667 0.53 -2.2
334,306 + EX28DRAFT_3667 0.87 -2.9
334,307 - EX28DRAFT_3667 0.88 -1.4
334,309 + EX28DRAFT_3667 0.88 -1.6
334,357 + -2.5
334,357 + -1.8
334,357 + -2.3
334,393 + -0.5
334,394 - -0.3
334,503 - -1.2
334,666 - EX28DRAFT_3668 0.20 -0.4
334,666 - EX28DRAFT_3668 0.20 -0.4
334,772 + EX28DRAFT_3668 0.27 -0.5
334,772 + EX28DRAFT_3668 0.27 -1.3
334,819 + EX28DRAFT_3668 0.30 -0.7
334,819 + EX28DRAFT_3668 0.30 -2.0
334,819 + EX28DRAFT_3668 0.30 -2.2
334,819 + EX28DRAFT_3668 0.30 -0.1
334,819 + EX28DRAFT_3668 0.30 -1.8
334,819 + EX28DRAFT_3668 0.30 -1.4
334,819 + EX28DRAFT_3668 0.30 -1.3
335,068 + EX28DRAFT_3668 0.48 -1.7
335,068 + EX28DRAFT_3668 0.48 -1.9
335,130 - EX28DRAFT_3668 0.53 -0.9
335,501 - EX28DRAFT_3668 0.79 -1.4
335,716 + -1.6
335,747 - +0.7
335,776 + +0.0
335,776 + -1.2
335,776 + -1.4
335,778 + -1.8
335,779 - -1.8
335,787 - -1.9
335,796 + -2.1
335,796 + -1.5
335,797 - -0.7
335,815 - -4.1
336,213 + EX28DRAFT_3669 0.38 -0.1
336,213 + EX28DRAFT_3669 0.38 -0.8
336,213 + EX28DRAFT_3669 0.38 -1.1
336,213 + EX28DRAFT_3669 0.38 -1.0
336,213 + EX28DRAFT_3669 0.38 -2.2
336,214 - EX28DRAFT_3669 0.38 -0.8
336,323 - EX28DRAFT_3669 0.48 -1.0
336,323 - EX28DRAFT_3669 0.48 -1.7
336,388 - EX28DRAFT_3669 0.54 -1.5
336,388 - EX28DRAFT_3669 0.54 -2.2
336,388 - EX28DRAFT_3669 0.54 -2.0
336,760 - EX28DRAFT_3669 0.88 -1.1

Or see this region's nucleotide sequence