Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3602 and EX28DRAFT_3603 are separated by 55 nucleotides EX28DRAFT_3603 and EX28DRAFT_3604 are separated by 27 nucleotides EX28DRAFT_3604 and EX28DRAFT_3605 are separated by 50 nucleotides
EX28DRAFT_3602: EX28DRAFT_3602 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 261,273 to 263,210
_3602
EX28DRAFT_3603: EX28DRAFT_3603 - Trp operon repressor, at 263,266 to 263,595
_3603
EX28DRAFT_3604: EX28DRAFT_3604 - inosine/xanthosine triphosphatase, at 263,623 to 264,138
_3604
EX28DRAFT_3605: EX28DRAFT_3605 - Fructose-2,6-bisphosphatase, at 264,189 to 264,836
_3605
Position (kb) 263
264 Strain fitness (log2 ratio) -2
-1
0
1
2 at 262.382 kb on + strand, within EX28DRAFT_3602 at 262.443 kb on + strand, within EX28DRAFT_3602 at 262.444 kb on - strand, within EX28DRAFT_3602 at 262.456 kb on + strand, within EX28DRAFT_3602 at 262.457 kb on - strand, within EX28DRAFT_3602 at 262.457 kb on - strand, within EX28DRAFT_3602 at 262.530 kb on + strand, within EX28DRAFT_3602 at 262.539 kb on - strand, within EX28DRAFT_3602 at 262.710 kb on + strand, within EX28DRAFT_3602 at 262.734 kb on - strand, within EX28DRAFT_3602 at 262.734 kb on - strand, within EX28DRAFT_3602 at 262.761 kb on + strand, within EX28DRAFT_3602 at 262.844 kb on + strand, within EX28DRAFT_3602 at 262.880 kb on + strand, within EX28DRAFT_3602 at 262.951 kb on - strand, within EX28DRAFT_3602 at 262.983 kb on - strand, within EX28DRAFT_3602 at 263.007 kb on + strand, within EX28DRAFT_3602 at 263.113 kb on - strand at 263.142 kb on + strand at 263.142 kb on + strand at 263.146 kb on - strand at 263.146 kb on - strand at 263.227 kb on + strand at 263.262 kb on + strand at 263.263 kb on - strand at 263.263 kb on - strand at 263.284 kb on + strand at 263.577 kb on - strand at 263.577 kb on - strand at 263.617 kb on - strand at 263.678 kb on + strand, within EX28DRAFT_3604 at 263.733 kb on + strand, within EX28DRAFT_3604 at 263.759 kb on + strand, within EX28DRAFT_3604 at 263.760 kb on - strand, within EX28DRAFT_3604 at 264.111 kb on + strand at 264.138 kb on + strand at 264.138 kb on + strand at 264.138 kb on + strand at 264.138 kb on + strand at 264.139 kb on - strand at 264.143 kb on - strand at 264.172 kb on + strand at 264.173 kb on - strand at 264.173 kb on - strand at 264.173 kb on - strand at 264.174 kb on + strand at 264.174 kb on + strand at 264.201 kb on + strand at 264.201 kb on + strand at 264.202 kb on - strand at 264.202 kb on - strand at 264.202 kb on - strand at 264.465 kb on - strand, within EX28DRAFT_3605 at 264.465 kb on - strand, within EX28DRAFT_3605 at 264.563 kb on + strand, within EX28DRAFT_3605
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 262,382 + EX28DRAFT_3602 0.57 -0.2 262,443 + EX28DRAFT_3602 0.60 -0.4 262,444 - EX28DRAFT_3602 0.60 -0.4 262,456 + EX28DRAFT_3602 0.61 +0.0 262,457 - EX28DRAFT_3602 0.61 +0.2 262,457 - EX28DRAFT_3602 0.61 -0.8 262,530 + EX28DRAFT_3602 0.65 -1.2 262,539 - EX28DRAFT_3602 0.65 +0.7 262,710 + EX28DRAFT_3602 0.74 +0.0 262,734 - EX28DRAFT_3602 0.75 +0.2 262,734 - EX28DRAFT_3602 0.75 +0.6 262,761 + EX28DRAFT_3602 0.77 +0.3 262,844 + EX28DRAFT_3602 0.81 -0.0 262,880 + EX28DRAFT_3602 0.83 -0.4 262,951 - EX28DRAFT_3602 0.87 +0.3 262,983 - EX28DRAFT_3602 0.88 -0.5 263,007 + EX28DRAFT_3602 0.89 -0.1 263,113 - +0.6 263,142 + -0.0 263,142 + -1.1 263,146 - -0.3 263,146 - +0.6 263,227 + -0.1 263,262 + -1.5 263,263 - -0.2 263,263 - -0.9 263,284 + -0.1 263,577 - +0.1 263,577 - -0.7 263,617 - +0.1 263,678 + EX28DRAFT_3604 0.11 -0.5 263,733 + EX28DRAFT_3604 0.21 -0.5 263,759 + EX28DRAFT_3604 0.26 +1.3 263,760 - EX28DRAFT_3604 0.27 -2.2 264,111 + +0.8 264,138 + +2.7 264,138 + -0.2 264,138 + -0.6 264,138 + -0.7 264,139 - -0.5 264,143 - +0.5 264,172 + +0.0 264,173 - +0.2 264,173 - +0.1 264,173 - -1.4 264,174 + -0.1 264,174 + +0.4 264,201 + -0.1 264,201 + +0.9 264,202 - +0.4 264,202 - -0.7 264,202 - -0.7 264,465 - EX28DRAFT_3605 0.43 -0.3 264,465 - EX28DRAFT_3605 0.43 +0.0 264,563 + EX28DRAFT_3605 0.58 -0.6
Or see this region's nucleotide sequence