Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3457

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3456 and EX28DRAFT_3457 are separated by 11 nucleotidesEX28DRAFT_3457 and EX28DRAFT_3458 are separated by 4 nucleotidesEX28DRAFT_3458 and EX28DRAFT_3459 are separated by 194 nucleotides EX28DRAFT_3456: EX28DRAFT_3456 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 129,839 to 131,221 _3456 EX28DRAFT_3457: EX28DRAFT_3457 - Beta-xylosidase, at 131,233 to 132,843 _3457 EX28DRAFT_3458: EX28DRAFT_3458 - transcriptional regulator, IclR family, at 132,848 to 133,606 _3458 EX28DRAFT_3459: EX28DRAFT_3459 - Protein of unknown function (DUF3828), at 133,801 to 134,253 _3459 Position (kb) 131 132 133Strain fitness (log2 ratio) -2 -1 0 1at 130.424 kb on + strand, within EX28DRAFT_3456at 130.445 kb on - strand, within EX28DRAFT_3456at 130.531 kb on + strand, within EX28DRAFT_3456at 130.532 kb on - strand, within EX28DRAFT_3456at 130.532 kb on - strand, within EX28DRAFT_3456at 130.604 kb on + strand, within EX28DRAFT_3456at 130.604 kb on + strand, within EX28DRAFT_3456at 130.604 kb on + strand, within EX28DRAFT_3456at 130.641 kb on + strand, within EX28DRAFT_3456at 130.642 kb on - strand, within EX28DRAFT_3456at 130.932 kb on - strand, within EX28DRAFT_3456at 130.994 kb on + strand, within EX28DRAFT_3456at 131.143 kb on + strandat 131.302 kb on + strandat 131.302 kb on + strandat 131.303 kb on - strandat 131.303 kb on - strandat 131.350 kb on + strandat 131.350 kb on + strandat 131.350 kb on + strandat 131.350 kb on + strandat 131.467 kb on + strand, within EX28DRAFT_3457at 131.468 kb on - strand, within EX28DRAFT_3457at 131.478 kb on + strand, within EX28DRAFT_3457at 131.542 kb on + strand, within EX28DRAFT_3457at 131.543 kb on - strand, within EX28DRAFT_3457at 131.543 kb on - strand, within EX28DRAFT_3457at 131.543 kb on - strand, within EX28DRAFT_3457at 131.648 kb on - strand, within EX28DRAFT_3457at 131.650 kb on + strand, within EX28DRAFT_3457at 131.650 kb on + strand, within EX28DRAFT_3457at 131.651 kb on - strand, within EX28DRAFT_3457at 131.651 kb on - strand, within EX28DRAFT_3457at 131.652 kb on + strand, within EX28DRAFT_3457at 131.652 kb on + strand, within EX28DRAFT_3457at 131.652 kb on + strand, within EX28DRAFT_3457at 131.653 kb on - strand, within EX28DRAFT_3457at 131.653 kb on - strand, within EX28DRAFT_3457at 131.653 kb on - strand, within EX28DRAFT_3457at 131.783 kb on - strand, within EX28DRAFT_3457at 131.821 kb on + strand, within EX28DRAFT_3457at 131.824 kb on + strand, within EX28DRAFT_3457at 131.825 kb on - strand, within EX28DRAFT_3457at 132.020 kb on - strand, within EX28DRAFT_3457at 132.083 kb on - strand, within EX28DRAFT_3457at 132.326 kb on + strand, within EX28DRAFT_3457at 132.469 kb on + strand, within EX28DRAFT_3457at 132.470 kb on - strand, within EX28DRAFT_3457at 132.472 kb on + strand, within EX28DRAFT_3457at 132.472 kb on + strand, within EX28DRAFT_3457at 132.472 kb on + strand, within EX28DRAFT_3457at 132.472 kb on + strand, within EX28DRAFT_3457at 132.493 kb on + strand, within EX28DRAFT_3457at 132.493 kb on + strand, within EX28DRAFT_3457at 132.639 kb on + strand, within EX28DRAFT_3457at 132.650 kb on - strand, within EX28DRAFT_3457at 132.661 kb on + strand, within EX28DRAFT_3457at 132.704 kb on - strandat 132.704 kb on - strandat 132.730 kb on + strandat 132.731 kb on - strandat 132.820 kb on + strandat 132.821 kb on - strandat 132.829 kb on + strandat 132.830 kb on - strandat 133.082 kb on + strand, within EX28DRAFT_3458at 133.272 kb on + strand, within EX28DRAFT_3458at 133.272 kb on + strand, within EX28DRAFT_3458at 133.272 kb on + strand, within EX28DRAFT_3458at 133.273 kb on - strand, within EX28DRAFT_3458at 133.273 kb on - strand, within EX28DRAFT_3458at 133.451 kb on - strand, within EX28DRAFT_3458at 133.452 kb on + strand, within EX28DRAFT_3458at 133.453 kb on - strand, within EX28DRAFT_3458at 133.453 kb on - strand, within EX28DRAFT_3458at 133.493 kb on - strand, within EX28DRAFT_3458at 133.535 kb on - strandat 133.607 kb on - strandat 133.776 kb on + strandat 133.788 kb on + strandat 133.813 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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130,424 + EX28DRAFT_3456 0.42 +0.2
130,445 - EX28DRAFT_3456 0.44 -0.0
130,531 + EX28DRAFT_3456 0.50 +1.0
130,532 - EX28DRAFT_3456 0.50 -0.2
130,532 - EX28DRAFT_3456 0.50 +0.5
130,604 + EX28DRAFT_3456 0.55 +0.3
130,604 + EX28DRAFT_3456 0.55 -0.2
130,604 + EX28DRAFT_3456 0.55 -0.3
130,641 + EX28DRAFT_3456 0.58 +0.1
130,642 - EX28DRAFT_3456 0.58 -0.1
130,932 - EX28DRAFT_3456 0.79 -0.4
130,994 + EX28DRAFT_3456 0.84 +0.3
131,143 + -1.2
131,302 + +0.3
131,302 + -0.7
131,303 - -0.5
131,303 - +1.3
131,350 + +0.1
131,350 + -0.9
131,350 + -0.4
131,350 + -0.5
131,467 + EX28DRAFT_3457 0.15 -1.8
131,468 - EX28DRAFT_3457 0.15 +0.6
131,478 + EX28DRAFT_3457 0.15 -0.0
131,542 + EX28DRAFT_3457 0.19 -0.2
131,543 - EX28DRAFT_3457 0.19 +0.4
131,543 - EX28DRAFT_3457 0.19 -0.5
131,543 - EX28DRAFT_3457 0.19 -0.3
131,648 - EX28DRAFT_3457 0.26 +0.1
131,650 + EX28DRAFT_3457 0.26 -0.2
131,650 + EX28DRAFT_3457 0.26 -0.7
131,651 - EX28DRAFT_3457 0.26 -0.4
131,651 - EX28DRAFT_3457 0.26 +0.1
131,652 + EX28DRAFT_3457 0.26 -0.3
131,652 + EX28DRAFT_3457 0.26 -0.8
131,652 + EX28DRAFT_3457 0.26 -0.4
131,653 - EX28DRAFT_3457 0.26 -0.4
131,653 - EX28DRAFT_3457 0.26 -0.4
131,653 - EX28DRAFT_3457 0.26 -0.6
131,783 - EX28DRAFT_3457 0.34 +0.0
131,821 + EX28DRAFT_3457 0.36 -0.0
131,824 + EX28DRAFT_3457 0.37 +1.0
131,825 - EX28DRAFT_3457 0.37 +1.0
132,020 - EX28DRAFT_3457 0.49 -0.8
132,083 - EX28DRAFT_3457 0.53 -0.6
132,326 + EX28DRAFT_3457 0.68 -0.3
132,469 + EX28DRAFT_3457 0.77 -0.7
132,470 - EX28DRAFT_3457 0.77 -0.9
132,472 + EX28DRAFT_3457 0.77 -1.0
132,472 + EX28DRAFT_3457 0.77 -0.0
132,472 + EX28DRAFT_3457 0.77 -0.2
132,472 + EX28DRAFT_3457 0.77 -0.6
132,493 + EX28DRAFT_3457 0.78 -1.4
132,493 + EX28DRAFT_3457 0.78 -0.1
132,639 + EX28DRAFT_3457 0.87 -0.3
132,650 - EX28DRAFT_3457 0.88 +0.5
132,661 + EX28DRAFT_3457 0.89 +0.1
132,704 - -0.1
132,704 - +0.8
132,730 + +0.5
132,731 - -0.8
132,820 + -0.1
132,821 - -0.2
132,829 + -0.4
132,830 - -0.2
133,082 + EX28DRAFT_3458 0.31 -0.1
133,272 + EX28DRAFT_3458 0.56 -0.5
133,272 + EX28DRAFT_3458 0.56 -0.1
133,272 + EX28DRAFT_3458 0.56 -0.3
133,273 - EX28DRAFT_3458 0.56 +0.3
133,273 - EX28DRAFT_3458 0.56 -0.3
133,451 - EX28DRAFT_3458 0.79 -0.1
133,452 + EX28DRAFT_3458 0.80 +1.4
133,453 - EX28DRAFT_3458 0.80 +0.2
133,453 - EX28DRAFT_3458 0.80 +0.0
133,493 - EX28DRAFT_3458 0.85 +0.3
133,535 - -0.3
133,607 - -0.2
133,776 + +0.2
133,788 + -0.1
133,813 - -0.4

Or see this region's nucleotide sequence