Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3374 and EX28DRAFT_3375 are separated by 192 nucleotides EX28DRAFT_3375 and EX28DRAFT_3376 are separated by 38 nucleotides EX28DRAFT_3376 and EX28DRAFT_3377 are separated by 66 nucleotides EX28DRAFT_3377 and EX28DRAFT_3378 are separated by 85 nucleotides
EX28DRAFT_3374: EX28DRAFT_3374 - Adenylosuccinate synthetase (EC 6.3.4.4), at 41,910 to 43,250
_3374
EX28DRAFT_3375: EX28DRAFT_3375 - transcriptional regulator, BadM/Rrf2 family, at 43,443 to 43,868
_3375
EX28DRAFT_3376: EX28DRAFT_3376 - ribonuclease R, at 43,907 to 46,351
_3376
EX28DRAFT_3377: EX28DRAFT_3377 - rRNA methylase, putative, group 3, at 46,418 to 47,152
_3377
EX28DRAFT_3378: EX28DRAFT_3378 - Arabinose efflux permease, at 47,238 to 48,512
_3378
Position (kb) 43
44
45
46
47 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 43.248 kb on + strand at 43.298 kb on + strand at 43.353 kb on + strand at 43.391 kb on + strand at 43.399 kb on - strand at 43.474 kb on + strand at 43.565 kb on + strand, within EX28DRAFT_3375 at 43.661 kb on + strand, within EX28DRAFT_3375 at 43.806 kb on + strand, within EX28DRAFT_3375 at 43.847 kb on + strand at 43.852 kb on + strand at 43.852 kb on + strand at 43.852 kb on + strand at 44.037 kb on + strand at 44.038 kb on - strand at 44.526 kb on + strand, within EX28DRAFT_3376 at 44.526 kb on + strand, within EX28DRAFT_3376 at 44.756 kb on + strand, within EX28DRAFT_3376 at 44.811 kb on + strand, within EX28DRAFT_3376 at 44.812 kb on - strand, within EX28DRAFT_3376 at 44.819 kb on + strand, within EX28DRAFT_3376 at 44.820 kb on - strand, within EX28DRAFT_3376 at 44.876 kb on + strand, within EX28DRAFT_3376 at 45.053 kb on + strand, within EX28DRAFT_3376 at 45.054 kb on - strand, within EX28DRAFT_3376 at 45.070 kb on + strand, within EX28DRAFT_3376 at 45.124 kb on + strand, within EX28DRAFT_3376 at 45.235 kb on + strand, within EX28DRAFT_3376 at 45.292 kb on + strand, within EX28DRAFT_3376 at 45.388 kb on + strand, within EX28DRAFT_3376 at 45.481 kb on + strand, within EX28DRAFT_3376 at 45.605 kb on - strand, within EX28DRAFT_3376 at 46.397 kb on + strand at 46.402 kb on - strand at 46.402 kb on - strand at 46.434 kb on - strand at 46.516 kb on + strand, within EX28DRAFT_3377 at 46.957 kb on + strand, within EX28DRAFT_3377 at 46.957 kb on + strand, within EX28DRAFT_3377 at 47.321 kb on - strand at 47.323 kb on + strand at 47.323 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 43,248 + -1.3 43,298 + +0.2 43,353 + -0.8 43,391 + +1.4 43,399 - -0.8 43,474 + +1.9 43,565 + EX28DRAFT_3375 0.29 -0.3 43,661 + EX28DRAFT_3375 0.51 +0.6 43,806 + EX28DRAFT_3375 0.85 +0.7 43,847 + -0.8 43,852 + -0.1 43,852 + +0.7 43,852 + +0.1 44,037 + -1.0 44,038 - -1.0 44,526 + EX28DRAFT_3376 0.25 -1.8 44,526 + EX28DRAFT_3376 0.25 -3.1 44,756 + EX28DRAFT_3376 0.35 -0.1 44,811 + EX28DRAFT_3376 0.37 -1.6 44,812 - EX28DRAFT_3376 0.37 -3.2 44,819 + EX28DRAFT_3376 0.37 -2.4 44,820 - EX28DRAFT_3376 0.37 -0.7 44,876 + EX28DRAFT_3376 0.40 -1.1 45,053 + EX28DRAFT_3376 0.47 -1.9 45,054 - EX28DRAFT_3376 0.47 -1.3 45,070 + EX28DRAFT_3376 0.48 -2.9 45,124 + EX28DRAFT_3376 0.50 -4.0 45,235 + EX28DRAFT_3376 0.54 -1.3 45,292 + EX28DRAFT_3376 0.57 -2.5 45,388 + EX28DRAFT_3376 0.61 -1.7 45,481 + EX28DRAFT_3376 0.64 -2.6 45,605 - EX28DRAFT_3376 0.69 -1.6 46,397 + -0.4 46,402 - +0.2 46,402 - -0.6 46,434 - -1.1 46,516 + EX28DRAFT_3377 0.13 -0.9 46,957 + EX28DRAFT_3377 0.73 -0.2 46,957 + EX28DRAFT_3377 0.73 +1.0 47,321 - -0.4 47,323 + +0.6 47,323 + -0.2
Or see this region's nucleotide sequence