Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3316 and EX28DRAFT_3317 overlap by 85 nucleotides EX28DRAFT_3317 and EX28DRAFT_3318 are separated by 387 nucleotides
EX28DRAFT_3316: EX28DRAFT_3316 - diguanylate cyclase (GGDEF) domain, at 615,117 to 617,198
_3316
EX28DRAFT_3317: EX28DRAFT_3317 - transcriptional regulator, TetR family, at 617,114 to 617,833
_3317
EX28DRAFT_3318: EX28DRAFT_3318 - RND family efflux transporter, MFP subunit, at 618,221 to 619,360
_3318
Position (kb) 617
618 Strain fitness (log2 ratio) -1
0
1
2 at 616.130 kb on + strand, within EX28DRAFT_3316 at 616.253 kb on - strand, within EX28DRAFT_3316 at 616.320 kb on - strand, within EX28DRAFT_3316 at 616.338 kb on + strand, within EX28DRAFT_3316 at 616.352 kb on + strand, within EX28DRAFT_3316 at 616.471 kb on - strand, within EX28DRAFT_3316 at 616.542 kb on - strand, within EX28DRAFT_3316 at 616.831 kb on + strand, within EX28DRAFT_3316 at 616.911 kb on + strand, within EX28DRAFT_3316 at 616.994 kb on + strand at 616.995 kb on - strand at 617.126 kb on + strand at 617.149 kb on + strand at 617.149 kb on + strand at 617.150 kb on - strand at 617.150 kb on - strand at 617.150 kb on - strand at 617.150 kb on - strand at 617.150 kb on - strand at 617.180 kb on - strand at 617.196 kb on + strand at 617.196 kb on + strand at 617.197 kb on - strand at 617.243 kb on + strand, within EX28DRAFT_3317 at 617.243 kb on + strand, within EX28DRAFT_3317 at 617.282 kb on - strand, within EX28DRAFT_3317 at 617.315 kb on + strand, within EX28DRAFT_3317 at 617.316 kb on - strand, within EX28DRAFT_3317 at 617.415 kb on - strand, within EX28DRAFT_3317 at 617.467 kb on + strand, within EX28DRAFT_3317 at 617.488 kb on + strand, within EX28DRAFT_3317 at 617.537 kb on - strand, within EX28DRAFT_3317 at 617.538 kb on + strand, within EX28DRAFT_3317 at 617.538 kb on + strand, within EX28DRAFT_3317 at 617.539 kb on - strand, within EX28DRAFT_3317 at 617.711 kb on - strand, within EX28DRAFT_3317 at 617.890 kb on - strand at 618.038 kb on + strand at 618.156 kb on + strand at 618.344 kb on - strand, within EX28DRAFT_3318 at 618.474 kb on + strand, within EX28DRAFT_3318 at 618.475 kb on - strand, within EX28DRAFT_3318 at 618.495 kb on - strand, within EX28DRAFT_3318 at 618.515 kb on + strand, within EX28DRAFT_3318 at 618.516 kb on - strand, within EX28DRAFT_3318 at 618.527 kb on + strand, within EX28DRAFT_3318 at 618.624 kb on - strand, within EX28DRAFT_3318 at 618.624 kb on - strand, within EX28DRAFT_3318 at 618.641 kb on + strand, within EX28DRAFT_3318 at 618.641 kb on + strand, within EX28DRAFT_3318 at 618.718 kb on + strand, within EX28DRAFT_3318 at 618.719 kb on - strand, within EX28DRAFT_3318 at 618.719 kb on - strand, within EX28DRAFT_3318 at 618.719 kb on - strand, within EX28DRAFT_3318
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 616,130 + EX28DRAFT_3316 0.49 +0.4 616,253 - EX28DRAFT_3316 0.55 +0.1 616,320 - EX28DRAFT_3316 0.58 +0.4 616,338 + EX28DRAFT_3316 0.59 -0.4 616,352 + EX28DRAFT_3316 0.59 +2.0 616,471 - EX28DRAFT_3316 0.65 -0.1 616,542 - EX28DRAFT_3316 0.68 +0.3 616,831 + EX28DRAFT_3316 0.82 +0.1 616,911 + EX28DRAFT_3316 0.86 -0.3 616,994 + +1.2 616,995 - +0.4 617,126 + +0.1 617,149 + -0.3 617,149 + +0.9 617,150 - +0.2 617,150 - -0.0 617,150 - -0.1 617,150 - +0.4 617,150 - +0.1 617,180 - +0.1 617,196 + +0.2 617,196 + +0.3 617,197 - +0.2 617,243 + EX28DRAFT_3317 0.18 -1.0 617,243 + EX28DRAFT_3317 0.18 +0.7 617,282 - EX28DRAFT_3317 0.23 -0.5 617,315 + EX28DRAFT_3317 0.28 -0.1 617,316 - EX28DRAFT_3317 0.28 -0.9 617,415 - EX28DRAFT_3317 0.42 -0.7 617,467 + EX28DRAFT_3317 0.49 -0.3 617,488 + EX28DRAFT_3317 0.52 +0.3 617,537 - EX28DRAFT_3317 0.59 -0.9 617,538 + EX28DRAFT_3317 0.59 +0.1 617,538 + EX28DRAFT_3317 0.59 +0.2 617,539 - EX28DRAFT_3317 0.59 +1.0 617,711 - EX28DRAFT_3317 0.83 -0.6 617,890 - +0.0 618,038 + -0.6 618,156 + +0.2 618,344 - EX28DRAFT_3318 0.11 -0.0 618,474 + EX28DRAFT_3318 0.22 +0.5 618,475 - EX28DRAFT_3318 0.22 -0.0 618,495 - EX28DRAFT_3318 0.24 -0.6 618,515 + EX28DRAFT_3318 0.26 +0.4 618,516 - EX28DRAFT_3318 0.26 -0.1 618,527 + EX28DRAFT_3318 0.27 +0.3 618,624 - EX28DRAFT_3318 0.35 +0.3 618,624 - EX28DRAFT_3318 0.35 +0.2 618,641 + EX28DRAFT_3318 0.37 +0.2 618,641 + EX28DRAFT_3318 0.37 +0.1 618,718 + EX28DRAFT_3318 0.44 +0.2 618,719 - EX28DRAFT_3318 0.44 -1.2 618,719 - EX28DRAFT_3318 0.44 +0.5 618,719 - EX28DRAFT_3318 0.44 -0.2
Or see this region's nucleotide sequence