Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3301 and EX28DRAFT_3302 are separated by 282 nucleotides EX28DRAFT_3302 and EX28DRAFT_3303 are separated by 182 nucleotides
EX28DRAFT_3301: EX28DRAFT_3301 - rod shape-determining protein MreB, at 600,833 to 601,876
_3301
EX28DRAFT_3302: EX28DRAFT_3302 - diguanylate cyclase (GGDEF) domain, at 602,159 to 604,099
_3302
EX28DRAFT_3303: EX28DRAFT_3303 - putative quinone oxidoreductase, YhdH/YhfP family, at 604,282 to 605,256
_3303
Position (kb) 602
603
604
605 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 601.991 kb on - strand at 602.047 kb on - strand at 602.068 kb on + strand at 602.108 kb on - strand at 602.108 kb on - strand at 602.133 kb on + strand at 602.170 kb on - strand at 602.301 kb on - strand at 602.331 kb on - strand at 602.397 kb on - strand, within EX28DRAFT_3302 at 602.397 kb on - strand, within EX28DRAFT_3302 at 602.403 kb on - strand, within EX28DRAFT_3302 at 602.403 kb on - strand, within EX28DRAFT_3302 at 602.501 kb on + strand, within EX28DRAFT_3302 at 602.569 kb on + strand, within EX28DRAFT_3302 at 602.631 kb on - strand, within EX28DRAFT_3302 at 602.722 kb on - strand, within EX28DRAFT_3302 at 602.856 kb on + strand, within EX28DRAFT_3302 at 602.860 kb on + strand, within EX28DRAFT_3302 at 602.860 kb on + strand, within EX28DRAFT_3302 at 602.860 kb on + strand, within EX28DRAFT_3302 at 602.860 kb on + strand, within EX28DRAFT_3302 at 602.861 kb on - strand, within EX28DRAFT_3302 at 603.223 kb on + strand, within EX28DRAFT_3302 at 603.224 kb on - strand, within EX28DRAFT_3302 at 603.251 kb on - strand, within EX28DRAFT_3302 at 603.404 kb on - strand, within EX28DRAFT_3302 at 603.454 kb on + strand, within EX28DRAFT_3302 at 603.739 kb on + strand, within EX28DRAFT_3302 at 603.739 kb on + strand, within EX28DRAFT_3302 at 603.740 kb on - strand, within EX28DRAFT_3302 at 603.740 kb on - strand, within EX28DRAFT_3302 at 603.740 kb on - strand, within EX28DRAFT_3302 at 603.740 kb on - strand, within EX28DRAFT_3302 at 603.740 kb on - strand, within EX28DRAFT_3302 at 603.743 kb on + strand, within EX28DRAFT_3302 at 603.743 kb on + strand, within EX28DRAFT_3302 at 603.743 kb on + strand, within EX28DRAFT_3302 at 603.744 kb on - strand, within EX28DRAFT_3302 at 603.744 kb on - strand, within EX28DRAFT_3302 at 603.744 kb on - strand, within EX28DRAFT_3302 at 604.048 kb on + strand at 604.069 kb on + strand at 604.069 kb on + strand at 604.170 kb on - strand at 604.184 kb on - strand at 604.184 kb on - strand at 604.184 kb on - strand at 604.196 kb on - strand at 604.204 kb on - strand at 604.233 kb on - strand at 604.233 kb on - strand at 604.235 kb on - strand at 604.235 kb on - strand at 604.249 kb on - strand at 604.299 kb on - strand at 604.402 kb on + strand, within EX28DRAFT_3303 at 604.403 kb on - strand, within EX28DRAFT_3303 at 604.405 kb on - strand, within EX28DRAFT_3303 at 604.529 kb on + strand, within EX28DRAFT_3303 at 604.529 kb on + strand, within EX28DRAFT_3303 at 604.530 kb on - strand, within EX28DRAFT_3303 at 604.530 kb on - strand, within EX28DRAFT_3303 at 604.827 kb on + strand, within EX28DRAFT_3303 at 604.838 kb on - strand, within EX28DRAFT_3303 at 604.945 kb on - strand, within EX28DRAFT_3303
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 601,991 - -0.7 602,047 - +0.5 602,068 + +0.6 602,108 - -0.4 602,108 - +1.1 602,133 + +1.0 602,170 - -0.5 602,301 - -1.6 602,331 - -1.6 602,397 - EX28DRAFT_3302 0.12 -2.3 602,397 - EX28DRAFT_3302 0.12 -1.8 602,403 - EX28DRAFT_3302 0.13 -1.2 602,403 - EX28DRAFT_3302 0.13 -0.4 602,501 + EX28DRAFT_3302 0.18 -0.2 602,569 + EX28DRAFT_3302 0.21 -0.4 602,631 - EX28DRAFT_3302 0.24 -2.8 602,722 - EX28DRAFT_3302 0.29 -0.5 602,856 + EX28DRAFT_3302 0.36 -1.9 602,860 + EX28DRAFT_3302 0.36 -1.9 602,860 + EX28DRAFT_3302 0.36 -0.6 602,860 + EX28DRAFT_3302 0.36 -1.3 602,860 + EX28DRAFT_3302 0.36 -1.0 602,861 - EX28DRAFT_3302 0.36 -0.3 603,223 + EX28DRAFT_3302 0.55 -1.4 603,224 - EX28DRAFT_3302 0.55 -1.1 603,251 - EX28DRAFT_3302 0.56 -1.3 603,404 - EX28DRAFT_3302 0.64 -1.1 603,454 + EX28DRAFT_3302 0.67 +0.4 603,739 + EX28DRAFT_3302 0.81 -1.7 603,739 + EX28DRAFT_3302 0.81 -0.7 603,740 - EX28DRAFT_3302 0.81 -3.2 603,740 - EX28DRAFT_3302 0.81 -1.2 603,740 - EX28DRAFT_3302 0.81 -1.2 603,740 - EX28DRAFT_3302 0.81 -0.7 603,740 - EX28DRAFT_3302 0.81 -1.3 603,743 + EX28DRAFT_3302 0.82 -1.7 603,743 + EX28DRAFT_3302 0.82 -2.0 603,743 + EX28DRAFT_3302 0.82 -0.9 603,744 - EX28DRAFT_3302 0.82 -1.3 603,744 - EX28DRAFT_3302 0.82 -1.4 603,744 - EX28DRAFT_3302 0.82 -0.1 604,048 + -0.9 604,069 + -0.7 604,069 + -1.5 604,170 - +0.9 604,184 - +0.3 604,184 - +0.3 604,184 - +1.4 604,196 - +1.2 604,204 - +0.5 604,233 - -0.3 604,233 - +0.5 604,235 - +0.7 604,235 - +1.3 604,249 - +0.2 604,299 - +0.5 604,402 + EX28DRAFT_3303 0.12 -0.0 604,403 - EX28DRAFT_3303 0.12 +0.1 604,405 - EX28DRAFT_3303 0.13 +0.3 604,529 + EX28DRAFT_3303 0.25 +0.7 604,529 + EX28DRAFT_3303 0.25 +0.7 604,530 - EX28DRAFT_3303 0.25 -0.7 604,530 - EX28DRAFT_3303 0.25 +0.5 604,827 + EX28DRAFT_3303 0.56 +0.4 604,838 - EX28DRAFT_3303 0.57 -0.5 604,945 - EX28DRAFT_3303 0.68 -0.9
Or see this region's nucleotide sequence