Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3190

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3188 and EX28DRAFT_3189 overlap by 11 nucleotidesEX28DRAFT_3189 and EX28DRAFT_3190 are separated by 16 nucleotidesEX28DRAFT_3190 and EX28DRAFT_3191 overlap by 4 nucleotides EX28DRAFT_3188: EX28DRAFT_3188 - Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC, at 488,914 to 489,693 _3188 EX28DRAFT_3189: EX28DRAFT_3189 - Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID, at 489,683 to 490,561 _3189 EX28DRAFT_3190: EX28DRAFT_3190 - Phosphotransferase system, mannose/fructose-specific component IIA, at 490,578 to 491,012 _3190 EX28DRAFT_3191: EX28DRAFT_3191 - N-acetylglucosamine-6-phosphate deacetylase, at 491,009 to 492,142 _3191 Position (kb) 490 491 492Strain fitness (log2 ratio) -2 -1 0 1 2at 489.633 kb on + strandat 489.634 kb on - strandat 489.634 kb on - strandat 489.691 kb on + strandat 489.692 kb on - strandat 489.692 kb on - strandat 489.692 kb on - strandat 489.805 kb on - strand, within EX28DRAFT_3189at 489.859 kb on + strand, within EX28DRAFT_3189at 489.860 kb on - strand, within EX28DRAFT_3189at 490.235 kb on + strand, within EX28DRAFT_3189at 490.349 kb on + strand, within EX28DRAFT_3189at 490.582 kb on + strandat 490.582 kb on + strandat 490.589 kb on + strandat 490.845 kb on - strand, within EX28DRAFT_3190at 490.897 kb on + strand, within EX28DRAFT_3190at 490.897 kb on + strand, within EX28DRAFT_3190at 490.897 kb on + strand, within EX28DRAFT_3190at 490.897 kb on + strand, within EX28DRAFT_3190at 491.074 kb on - strandat 491.074 kb on - strandat 491.159 kb on + strand, within EX28DRAFT_3191at 491.159 kb on + strand, within EX28DRAFT_3191at 491.160 kb on - strand, within EX28DRAFT_3191at 491.243 kb on - strand, within EX28DRAFT_3191at 491.390 kb on + strand, within EX28DRAFT_3191at 491.390 kb on + strand, within EX28DRAFT_3191at 491.467 kb on - strand, within EX28DRAFT_3191at 491.467 kb on - strand, within EX28DRAFT_3191at 491.549 kb on - strand, within EX28DRAFT_3191at 491.549 kb on - strand, within EX28DRAFT_3191at 491.549 kb on - strand, within EX28DRAFT_3191at 491.562 kb on + strand, within EX28DRAFT_3191at 491.648 kb on + strand, within EX28DRAFT_3191at 491.772 kb on + strand, within EX28DRAFT_3191at 491.773 kb on - strand, within EX28DRAFT_3191at 491.833 kb on + strand, within EX28DRAFT_3191at 491.850 kb on - strand, within EX28DRAFT_3191at 491.851 kb on + strand, within EX28DRAFT_3191at 491.852 kb on - strand, within EX28DRAFT_3191at 491.953 kb on + strand, within EX28DRAFT_3191at 491.954 kb on - strand, within EX28DRAFT_3191at 491.954 kb on - strand, within EX28DRAFT_3191

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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489,633 + -0.2
489,634 - -0.2
489,634 - -1.8
489,691 + +0.3
489,692 - +1.6
489,692 - +0.5
489,692 - +0.2
489,805 - EX28DRAFT_3189 0.14 -0.1
489,859 + EX28DRAFT_3189 0.20 +0.4
489,860 - EX28DRAFT_3189 0.20 -1.5
490,235 + EX28DRAFT_3189 0.63 +0.6
490,349 + EX28DRAFT_3189 0.76 -0.1
490,582 + -0.1
490,582 + -0.6
490,589 + -0.1
490,845 - EX28DRAFT_3190 0.61 +0.3
490,897 + EX28DRAFT_3190 0.73 +0.4
490,897 + EX28DRAFT_3190 0.73 +2.0
490,897 + EX28DRAFT_3190 0.73 +0.2
490,897 + EX28DRAFT_3190 0.73 +2.3
491,074 - +0.1
491,074 - +0.6
491,159 + EX28DRAFT_3191 0.13 -0.5
491,159 + EX28DRAFT_3191 0.13 +1.0
491,160 - EX28DRAFT_3191 0.13 +0.1
491,243 - EX28DRAFT_3191 0.21 -0.5
491,390 + EX28DRAFT_3191 0.34 +0.4
491,390 + EX28DRAFT_3191 0.34 -0.2
491,467 - EX28DRAFT_3191 0.40 -0.2
491,467 - EX28DRAFT_3191 0.40 +0.1
491,549 - EX28DRAFT_3191 0.48 -0.1
491,549 - EX28DRAFT_3191 0.48 +0.7
491,549 - EX28DRAFT_3191 0.48 -0.3
491,562 + EX28DRAFT_3191 0.49 +0.1
491,648 + EX28DRAFT_3191 0.56 +0.1
491,772 + EX28DRAFT_3191 0.67 +0.3
491,773 - EX28DRAFT_3191 0.67 -0.5
491,833 + EX28DRAFT_3191 0.73 +1.2
491,850 - EX28DRAFT_3191 0.74 +0.5
491,851 + EX28DRAFT_3191 0.74 -1.0
491,852 - EX28DRAFT_3191 0.74 -0.0
491,953 + EX28DRAFT_3191 0.83 -0.3
491,954 - EX28DRAFT_3191 0.83 -0.1
491,954 - EX28DRAFT_3191 0.83 +0.1

Or see this region's nucleotide sequence