Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3088 and EX28DRAFT_3089 are separated by 40 nucleotides EX28DRAFT_3089 and EX28DRAFT_3090 are separated by 147 nucleotides
EX28DRAFT_3088: EX28DRAFT_3088 - Arabinose efflux permease, at 399,775 to 401,241
_3088
EX28DRAFT_3089: EX28DRAFT_3089 - Transcriptional regulators, at 401,282 to 401,704
_3089
EX28DRAFT_3090: EX28DRAFT_3090 - Esterase/lipase, at 401,852 to 402,865
_3090
Position (kb) 401
402 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 400.285 kb on - strand, within EX28DRAFT_3088 at 400.364 kb on - strand, within EX28DRAFT_3088 at 400.462 kb on + strand, within EX28DRAFT_3088 at 400.462 kb on + strand, within EX28DRAFT_3088 at 400.462 kb on + strand, within EX28DRAFT_3088 at 400.464 kb on + strand, within EX28DRAFT_3088 at 400.465 kb on - strand, within EX28DRAFT_3088 at 400.538 kb on - strand, within EX28DRAFT_3088 at 400.539 kb on + strand, within EX28DRAFT_3088 at 400.539 kb on + strand, within EX28DRAFT_3088 at 400.539 kb on + strand, within EX28DRAFT_3088 at 400.540 kb on - strand, within EX28DRAFT_3088 at 400.597 kb on - strand, within EX28DRAFT_3088 at 400.639 kb on + strand, within EX28DRAFT_3088 at 400.639 kb on + strand, within EX28DRAFT_3088 at 400.640 kb on - strand, within EX28DRAFT_3088 at 400.679 kb on + strand, within EX28DRAFT_3088 at 400.680 kb on - strand, within EX28DRAFT_3088 at 400.694 kb on - strand, within EX28DRAFT_3088 at 400.694 kb on - strand, within EX28DRAFT_3088 at 400.825 kb on + strand, within EX28DRAFT_3088 at 401.250 kb on + strand at 401.250 kb on + strand at 401.251 kb on - strand at 401.251 kb on - strand at 401.251 kb on - strand at 401.283 kb on + strand at 401.283 kb on + strand at 401.284 kb on - strand at 401.284 kb on - strand at 401.284 kb on - strand at 401.418 kb on - strand, within EX28DRAFT_3089 at 401.832 kb on - strand at 401.848 kb on + strand at 401.947 kb on - strand at 401.959 kb on + strand, within EX28DRAFT_3090 at 402.157 kb on + strand, within EX28DRAFT_3090 at 402.158 kb on - strand, within EX28DRAFT_3090 at 402.301 kb on + strand, within EX28DRAFT_3090 at 402.499 kb on + strand, within EX28DRAFT_3090 at 402.509 kb on + strand, within EX28DRAFT_3090 at 402.510 kb on - strand, within EX28DRAFT_3090 at 402.530 kb on + strand, within EX28DRAFT_3090 at 402.572 kb on + strand, within EX28DRAFT_3090 at 402.573 kb on - strand, within EX28DRAFT_3090 at 402.602 kb on - strand, within EX28DRAFT_3090
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 400,285 - EX28DRAFT_3088 0.35 -0.3 400,364 - EX28DRAFT_3088 0.40 -0.8 400,462 + EX28DRAFT_3088 0.47 +0.2 400,462 + EX28DRAFT_3088 0.47 -0.1 400,462 + EX28DRAFT_3088 0.47 +0.5 400,464 + EX28DRAFT_3088 0.47 +0.3 400,465 - EX28DRAFT_3088 0.47 +0.1 400,538 - EX28DRAFT_3088 0.52 -0.2 400,539 + EX28DRAFT_3088 0.52 -0.8 400,539 + EX28DRAFT_3088 0.52 -0.8 400,539 + EX28DRAFT_3088 0.52 -1.2 400,540 - EX28DRAFT_3088 0.52 -0.7 400,597 - EX28DRAFT_3088 0.56 +1.0 400,639 + EX28DRAFT_3088 0.59 -0.9 400,639 + EX28DRAFT_3088 0.59 -0.0 400,640 - EX28DRAFT_3088 0.59 +0.0 400,679 + EX28DRAFT_3088 0.62 -0.2 400,680 - EX28DRAFT_3088 0.62 -0.7 400,694 - EX28DRAFT_3088 0.63 -0.9 400,694 - EX28DRAFT_3088 0.63 -0.0 400,825 + EX28DRAFT_3088 0.72 +0.7 401,250 + +0.8 401,250 + +0.1 401,251 - +0.1 401,251 - -0.3 401,251 - -0.0 401,283 + -0.3 401,283 + -1.0 401,284 - -0.6 401,284 - -0.8 401,284 - +0.1 401,418 - EX28DRAFT_3089 0.32 -2.1 401,832 - -1.1 401,848 + -0.0 401,947 - -0.1 401,959 + EX28DRAFT_3090 0.11 +0.5 402,157 + EX28DRAFT_3090 0.30 +0.0 402,158 - EX28DRAFT_3090 0.30 -0.3 402,301 + EX28DRAFT_3090 0.44 +0.3 402,499 + EX28DRAFT_3090 0.64 -0.3 402,509 + EX28DRAFT_3090 0.65 -0.3 402,510 - EX28DRAFT_3090 0.65 -2.2 402,530 + EX28DRAFT_3090 0.67 -0.5 402,572 + EX28DRAFT_3090 0.71 -3.1 402,573 - EX28DRAFT_3090 0.71 -0.4 402,602 - EX28DRAFT_3090 0.74 +0.5
Or see this region's nucleotide sequence