Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3068 and EX28DRAFT_3069 are separated by 28 nucleotides EX28DRAFT_3069 and EX28DRAFT_3070 overlap by 1 nucleotides EX28DRAFT_3070 and EX28DRAFT_3071 are separated by 27 nucleotides EX28DRAFT_3071 and EX28DRAFT_3072 overlap by 4 nucleotides
EX28DRAFT_3068: EX28DRAFT_3068 - DNA topoisomerase IV, B subunit, proteobacterial, at 378,451 to 380,343
_3068
EX28DRAFT_3069: EX28DRAFT_3069 - Predicted esterase, at 380,372 to 380,953
_3069
EX28DRAFT_3070: EX28DRAFT_3070 - Predicted phosphohydrolases, at 380,953 to 381,780
_3070
EX28DRAFT_3071: EX28DRAFT_3071 - Uncharacterized protein conserved in bacteria, at 381,808 to 382,230
_3071
EX28DRAFT_3072: EX28DRAFT_3072 - nudix-type nucleoside diphosphatase, YffH/AdpP family, at 382,227 to 382,859
_3072
Position (kb) 380
381
382 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 380.354 kb on - strand at 380.457 kb on - strand, within EX28DRAFT_3069 at 380.457 kb on - strand, within EX28DRAFT_3069 at 380.457 kb on - strand, within EX28DRAFT_3069 at 380.459 kb on - strand, within EX28DRAFT_3069 at 380.479 kb on - strand, within EX28DRAFT_3069 at 380.479 kb on - strand, within EX28DRAFT_3069 at 380.479 kb on - strand, within EX28DRAFT_3069 at 380.587 kb on - strand, within EX28DRAFT_3069 at 380.587 kb on - strand, within EX28DRAFT_3069 at 380.591 kb on - strand, within EX28DRAFT_3069 at 380.591 kb on - strand, within EX28DRAFT_3069 at 380.591 kb on - strand, within EX28DRAFT_3069 at 380.604 kb on - strand, within EX28DRAFT_3069 at 380.610 kb on + strand, within EX28DRAFT_3069 at 380.610 kb on + strand, within EX28DRAFT_3069 at 380.610 kb on + strand, within EX28DRAFT_3069 at 380.610 kb on + strand, within EX28DRAFT_3069 at 380.610 kb on + strand, within EX28DRAFT_3069 at 380.610 kb on + strand, within EX28DRAFT_3069 at 380.610 kb on + strand, within EX28DRAFT_3069 at 380.611 kb on - strand, within EX28DRAFT_3069 at 380.611 kb on - strand, within EX28DRAFT_3069 at 380.611 kb on - strand, within EX28DRAFT_3069 at 380.733 kb on + strand, within EX28DRAFT_3069 at 380.734 kb on - strand, within EX28DRAFT_3069 at 380.794 kb on + strand, within EX28DRAFT_3069 at 380.794 kb on + strand, within EX28DRAFT_3069 at 380.795 kb on - strand, within EX28DRAFT_3069 at 380.938 kb on - strand at 380.938 kb on - strand at 381.389 kb on - strand, within EX28DRAFT_3070 at 381.389 kb on - strand, within EX28DRAFT_3070 at 381.452 kb on - strand, within EX28DRAFT_3070 at 381.727 kb on + strand at 381.727 kb on + strand at 381.728 kb on - strand at 381.792 kb on - strand at 381.792 kb on - strand at 381.792 kb on - strand at 381.796 kb on - strand at 381.796 kb on - strand at 381.801 kb on + strand at 381.802 kb on - strand at 381.802 kb on - strand at 381.802 kb on - strand at 381.842 kb on - strand at 381.848 kb on + strand at 381.849 kb on - strand at 381.990 kb on - strand, within EX28DRAFT_3071 at 382.023 kb on - strand, within EX28DRAFT_3071 at 382.026 kb on + strand, within EX28DRAFT_3071 at 382.026 kb on + strand, within EX28DRAFT_3071 at 382.027 kb on - strand, within EX28DRAFT_3071 at 382.062 kb on + strand, within EX28DRAFT_3071 at 382.330 kb on + strand, within EX28DRAFT_3072 at 382.331 kb on - strand, within EX28DRAFT_3072 at 382.331 kb on - strand, within EX28DRAFT_3072 at 382.431 kb on - strand, within EX28DRAFT_3072 at 382.575 kb on + strand, within EX28DRAFT_3072 at 382.671 kb on + strand, within EX28DRAFT_3072
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 380,354 - -0.8 380,457 - EX28DRAFT_3069 0.15 +0.0 380,457 - EX28DRAFT_3069 0.15 +0.2 380,457 - EX28DRAFT_3069 0.15 -2.2 380,459 - EX28DRAFT_3069 0.15 -1.1 380,479 - EX28DRAFT_3069 0.18 -0.1 380,479 - EX28DRAFT_3069 0.18 -0.9 380,479 - EX28DRAFT_3069 0.18 +0.4 380,587 - EX28DRAFT_3069 0.37 -0.3 380,587 - EX28DRAFT_3069 0.37 +0.1 380,591 - EX28DRAFT_3069 0.38 -0.9 380,591 - EX28DRAFT_3069 0.38 -1.1 380,591 - EX28DRAFT_3069 0.38 -0.1 380,604 - EX28DRAFT_3069 0.40 +0.5 380,610 + EX28DRAFT_3069 0.41 -0.8 380,610 + EX28DRAFT_3069 0.41 +1.0 380,610 + EX28DRAFT_3069 0.41 +0.2 380,610 + EX28DRAFT_3069 0.41 -0.8 380,610 + EX28DRAFT_3069 0.41 +2.1 380,610 + EX28DRAFT_3069 0.41 -0.3 380,610 + EX28DRAFT_3069 0.41 +0.1 380,611 - EX28DRAFT_3069 0.41 -0.5 380,611 - EX28DRAFT_3069 0.41 +0.1 380,611 - EX28DRAFT_3069 0.41 -0.7 380,733 + EX28DRAFT_3069 0.62 -0.4 380,734 - EX28DRAFT_3069 0.62 +1.2 380,794 + EX28DRAFT_3069 0.73 -0.4 380,794 + EX28DRAFT_3069 0.73 +0.5 380,795 - EX28DRAFT_3069 0.73 -0.6 380,938 - +0.1 380,938 - -0.2 381,389 - EX28DRAFT_3070 0.53 -1.2 381,389 - EX28DRAFT_3070 0.53 -1.6 381,452 - EX28DRAFT_3070 0.60 -2.4 381,727 + -2.3 381,727 + -3.5 381,728 - -1.0 381,792 - -0.2 381,792 - +0.1 381,792 - -0.2 381,796 - -0.5 381,796 - -0.2 381,801 + -0.5 381,802 - +0.3 381,802 - -0.5 381,802 - -0.8 381,842 - -0.2 381,848 + -1.0 381,849 - -0.0 381,990 - EX28DRAFT_3071 0.43 +0.2 382,023 - EX28DRAFT_3071 0.51 +0.3 382,026 + EX28DRAFT_3071 0.52 -0.1 382,026 + EX28DRAFT_3071 0.52 -0.7 382,027 - EX28DRAFT_3071 0.52 +0.1 382,062 + EX28DRAFT_3071 0.60 +0.3 382,330 + EX28DRAFT_3072 0.16 -0.6 382,331 - EX28DRAFT_3072 0.16 -0.2 382,331 - EX28DRAFT_3072 0.16 +0.4 382,431 - EX28DRAFT_3072 0.32 +0.2 382,575 + EX28DRAFT_3072 0.55 +0.5 382,671 + EX28DRAFT_3072 0.70 -0.4
Or see this region's nucleotide sequence