Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3033

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3032 and EX28DRAFT_3033 are separated by 141 nucleotidesEX28DRAFT_3033 and EX28DRAFT_3034 are separated by 10 nucleotidesEX28DRAFT_3034 and EX28DRAFT_3035 are separated by 179 nucleotidesEX28DRAFT_3035 and EX28DRAFT_3036 are separated by 52 nucleotides EX28DRAFT_3032: EX28DRAFT_3032 - Sugar phosphate isomerases/epimerases, at 343,274 to 344,329 _3032 EX28DRAFT_3033: EX28DRAFT_3033 - transcriptional regulator, TetR family, at 344,471 to 345,061 _3033 EX28DRAFT_3034: EX28DRAFT_3034 - hypothetical protein, at 345,072 to 345,350 _3034 EX28DRAFT_3035: EX28DRAFT_3035 - hypothetical protein, at 345,530 to 345,979 _3035 EX28DRAFT_3036: EX28DRAFT_3036 - RNA, at 346,032 to 346,118 _3036 Position (kb) 344 345 346Strain fitness (log2 ratio) -2 -1 0 1at 343.481 kb on - strand, within EX28DRAFT_3032at 343.557 kb on + strand, within EX28DRAFT_3032at 343.558 kb on - strand, within EX28DRAFT_3032at 343.561 kb on + strand, within EX28DRAFT_3032at 343.626 kb on + strand, within EX28DRAFT_3032at 343.648 kb on - strand, within EX28DRAFT_3032at 343.665 kb on - strand, within EX28DRAFT_3032at 343.723 kb on - strand, within EX28DRAFT_3032at 343.789 kb on + strand, within EX28DRAFT_3032at 344.043 kb on - strand, within EX28DRAFT_3032at 344.063 kb on + strand, within EX28DRAFT_3032at 344.063 kb on + strand, within EX28DRAFT_3032at 344.064 kb on - strand, within EX28DRAFT_3032at 344.131 kb on + strand, within EX28DRAFT_3032at 344.263 kb on + strandat 344.332 kb on + strandat 344.332 kb on + strandat 344.332 kb on + strandat 344.333 kb on - strandat 344.333 kb on - strandat 344.334 kb on + strandat 344.334 kb on + strandat 344.335 kb on - strandat 344.335 kb on - strandat 344.371 kb on - strandat 344.397 kb on + strandat 344.426 kb on - strandat 344.426 kb on - strandat 344.546 kb on + strand, within EX28DRAFT_3033at 344.547 kb on - strand, within EX28DRAFT_3033at 344.607 kb on - strand, within EX28DRAFT_3033at 344.785 kb on + strand, within EX28DRAFT_3033at 344.785 kb on + strand, within EX28DRAFT_3033at 344.785 kb on + strand, within EX28DRAFT_3033at 344.785 kb on + strand, within EX28DRAFT_3033at 344.785 kb on + strand, within EX28DRAFT_3033at 344.790 kb on + strand, within EX28DRAFT_3033at 344.951 kb on + strand, within EX28DRAFT_3033at 344.951 kb on + strand, within EX28DRAFT_3033at 345.175 kb on + strand, within EX28DRAFT_3034at 345.242 kb on + strand, within EX28DRAFT_3034at 345.243 kb on - strand, within EX28DRAFT_3034at 345.247 kb on - strand, within EX28DRAFT_3034at 345.247 kb on - strand, within EX28DRAFT_3034at 345.251 kb on + strand, within EX28DRAFT_3034at 345.251 kb on + strand, within EX28DRAFT_3034at 345.251 kb on + strand, within EX28DRAFT_3034at 345.252 kb on - strand, within EX28DRAFT_3034at 345.306 kb on - strand, within EX28DRAFT_3034at 345.331 kb on - strandat 345.331 kb on - strandat 345.338 kb on - strandat 345.338 kb on - strandat 345.384 kb on - strandat 345.409 kb on + strandat 345.431 kb on - strandat 345.451 kb on + strandat 345.452 kb on - strandat 345.453 kb on + strandat 345.477 kb on + strandat 345.532 kb on - strandat 345.532 kb on - strandat 345.595 kb on - strand, within EX28DRAFT_3035at 345.690 kb on + strand, within EX28DRAFT_3035at 345.691 kb on - strand, within EX28DRAFT_3035at 345.879 kb on + strand, within EX28DRAFT_3035at 345.886 kb on - strand, within EX28DRAFT_3035at 346.061 kb on + strand, within EX28DRAFT_3036

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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343,481 - EX28DRAFT_3032 0.20 -0.2
343,557 + EX28DRAFT_3032 0.27 +0.5
343,558 - EX28DRAFT_3032 0.27 +0.3
343,561 + EX28DRAFT_3032 0.27 +0.2
343,626 + EX28DRAFT_3032 0.33 +0.5
343,648 - EX28DRAFT_3032 0.35 -0.0
343,665 - EX28DRAFT_3032 0.37 -0.0
343,723 - EX28DRAFT_3032 0.43 -2.2
343,789 + EX28DRAFT_3032 0.49 +0.4
344,043 - EX28DRAFT_3032 0.73 +0.5
344,063 + EX28DRAFT_3032 0.75 -0.1
344,063 + EX28DRAFT_3032 0.75 +0.2
344,064 - EX28DRAFT_3032 0.75 -0.0
344,131 + EX28DRAFT_3032 0.81 +0.5
344,263 + +0.5
344,332 + -0.0
344,332 + -0.1
344,332 + -0.6
344,333 - -0.9
344,333 - +0.3
344,334 + -0.3
344,334 + +0.4
344,335 - -0.7
344,335 - +1.2
344,371 - -0.1
344,397 + -1.1
344,426 - +0.5
344,426 - +1.1
344,546 + EX28DRAFT_3033 0.13 -0.1
344,547 - EX28DRAFT_3033 0.13 -2.3
344,607 - EX28DRAFT_3033 0.23 -0.5
344,785 + EX28DRAFT_3033 0.53 -0.1
344,785 + EX28DRAFT_3033 0.53 -1.7
344,785 + EX28DRAFT_3033 0.53 -1.4
344,785 + EX28DRAFT_3033 0.53 -0.9
344,785 + EX28DRAFT_3033 0.53 +0.4
344,790 + EX28DRAFT_3033 0.54 -0.9
344,951 + EX28DRAFT_3033 0.81 -2.4
344,951 + EX28DRAFT_3033 0.81 -0.1
345,175 + EX28DRAFT_3034 0.37 -0.4
345,242 + EX28DRAFT_3034 0.61 -1.1
345,243 - EX28DRAFT_3034 0.61 -0.4
345,247 - EX28DRAFT_3034 0.63 -0.1
345,247 - EX28DRAFT_3034 0.63 -0.5
345,251 + EX28DRAFT_3034 0.64 -0.1
345,251 + EX28DRAFT_3034 0.64 +0.0
345,251 + EX28DRAFT_3034 0.64 +0.0
345,252 - EX28DRAFT_3034 0.65 -0.4
345,306 - EX28DRAFT_3034 0.84 -0.2
345,331 - -0.2
345,331 - +0.4
345,338 - -0.3
345,338 - -0.5
345,384 - +0.4
345,409 + -1.7
345,431 - -0.7
345,451 + -0.5
345,452 - +0.0
345,453 + -0.1
345,477 + +0.2
345,532 - -0.7
345,532 - -0.3
345,595 - EX28DRAFT_3035 0.14 +0.7
345,690 + EX28DRAFT_3035 0.36 -0.9
345,691 - EX28DRAFT_3035 0.36 -0.8
345,879 + EX28DRAFT_3035 0.78 +0.2
345,886 - EX28DRAFT_3035 0.79 -0.8
346,061 + EX28DRAFT_3036 0.33 -0.6

Or see this region's nucleotide sequence