Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3028 and EX28DRAFT_3029 are separated by 160 nucleotides EX28DRAFT_3029 and EX28DRAFT_3030 are separated by 73 nucleotides EX28DRAFT_3030 and EX28DRAFT_3031 overlap by 11 nucleotides
EX28DRAFT_3028: EX28DRAFT_3028 - Glutathione S-transferase, at 340,028 to 340,894
_3028
EX28DRAFT_3029: EX28DRAFT_3029 - hypothetical protein, at 341,055 to 341,387
_3029
EX28DRAFT_3030: EX28DRAFT_3030 - Esterase/lipase, at 341,461 to 342,363
_3030
EX28DRAFT_3031: EX28DRAFT_3031 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 342,353 to 343,249
_3031
Position (kb) 341
342 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 340.111 kb on + strand at 340.170 kb on - strand, within EX28DRAFT_3028 at 340.388 kb on - strand, within EX28DRAFT_3028 at 340.520 kb on + strand, within EX28DRAFT_3028 at 340.520 kb on + strand, within EX28DRAFT_3028 at 340.521 kb on - strand, within EX28DRAFT_3028 at 340.521 kb on - strand, within EX28DRAFT_3028 at 340.526 kb on + strand, within EX28DRAFT_3028 at 340.526 kb on + strand, within EX28DRAFT_3028 at 340.527 kb on - strand, within EX28DRAFT_3028 at 340.527 kb on - strand, within EX28DRAFT_3028 at 340.527 kb on - strand, within EX28DRAFT_3028 at 340.640 kb on + strand, within EX28DRAFT_3028 at 340.640 kb on + strand, within EX28DRAFT_3028 at 340.640 kb on + strand, within EX28DRAFT_3028 at 340.640 kb on + strand, within EX28DRAFT_3028 at 340.641 kb on - strand, within EX28DRAFT_3028 at 340.641 kb on - strand, within EX28DRAFT_3028 at 340.734 kb on - strand, within EX28DRAFT_3028 at 340.739 kb on - strand, within EX28DRAFT_3028 at 340.870 kb on + strand at 340.879 kb on + strand at 340.879 kb on + strand at 340.879 kb on + strand at 340.879 kb on + strand at 340.880 kb on - strand at 340.880 kb on - strand at 340.892 kb on + strand at 340.950 kb on + strand at 340.951 kb on - strand at 340.970 kb on + strand at 340.983 kb on - strand at 341.055 kb on - strand at 341.066 kb on + strand at 341.066 kb on + strand at 341.253 kb on - strand, within EX28DRAFT_3029 at 341.514 kb on + strand at 341.514 kb on + strand at 341.514 kb on + strand at 341.514 kb on + strand at 341.515 kb on - strand at 341.557 kb on + strand, within EX28DRAFT_3030 at 341.592 kb on - strand, within EX28DRAFT_3030 at 341.621 kb on + strand, within EX28DRAFT_3030 at 341.622 kb on - strand, within EX28DRAFT_3030 at 341.671 kb on - strand, within EX28DRAFT_3030 at 341.687 kb on + strand, within EX28DRAFT_3030 at 341.750 kb on + strand, within EX28DRAFT_3030 at 341.750 kb on + strand, within EX28DRAFT_3030 at 341.750 kb on + strand, within EX28DRAFT_3030 at 341.751 kb on - strand, within EX28DRAFT_3030 at 341.751 kb on - strand, within EX28DRAFT_3030 at 341.751 kb on - strand, within EX28DRAFT_3030 at 341.751 kb on - strand, within EX28DRAFT_3030 at 341.751 kb on - strand, within EX28DRAFT_3030 at 341.800 kb on + strand, within EX28DRAFT_3030 at 341.927 kb on - strand, within EX28DRAFT_3030 at 342.035 kb on - strand, within EX28DRAFT_3030 at 342.035 kb on - strand, within EX28DRAFT_3030 at 342.080 kb on + strand, within EX28DRAFT_3030 at 342.168 kb on + strand, within EX28DRAFT_3030 at 342.171 kb on - strand, within EX28DRAFT_3030 at 342.215 kb on + strand, within EX28DRAFT_3030 at 342.215 kb on + strand, within EX28DRAFT_3030 at 342.216 kb on - strand, within EX28DRAFT_3030 at 342.216 kb on - strand, within EX28DRAFT_3030 at 342.352 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 340,111 + -0.7 340,170 - EX28DRAFT_3028 0.16 -0.2 340,388 - EX28DRAFT_3028 0.42 -1.5 340,520 + EX28DRAFT_3028 0.57 -0.5 340,520 + EX28DRAFT_3028 0.57 -3.4 340,521 - EX28DRAFT_3028 0.57 -2.2 340,521 - EX28DRAFT_3028 0.57 -0.2 340,526 + EX28DRAFT_3028 0.57 -1.1 340,526 + EX28DRAFT_3028 0.57 +0.6 340,527 - EX28DRAFT_3028 0.58 +0.1 340,527 - EX28DRAFT_3028 0.58 -1.2 340,527 - EX28DRAFT_3028 0.58 +0.1 340,640 + EX28DRAFT_3028 0.71 -2.2 340,640 + EX28DRAFT_3028 0.71 -0.4 340,640 + EX28DRAFT_3028 0.71 -1.1 340,640 + EX28DRAFT_3028 0.71 -0.3 340,641 - EX28DRAFT_3028 0.71 +0.1 340,641 - EX28DRAFT_3028 0.71 -1.3 340,734 - EX28DRAFT_3028 0.81 -1.9 340,739 - EX28DRAFT_3028 0.82 -0.1 340,870 + -0.1 340,879 + -1.0 340,879 + -0.4 340,879 + -0.7 340,879 + -0.0 340,880 - -1.0 340,880 - -0.4 340,892 + -0.7 340,950 + +0.1 340,951 - +0.5 340,970 + +0.2 340,983 - -0.5 341,055 - -0.2 341,066 + -0.1 341,066 + +0.6 341,253 - EX28DRAFT_3029 0.59 -0.8 341,514 + -0.4 341,514 + +0.4 341,514 + -0.5 341,514 + -0.2 341,515 - -0.3 341,557 + EX28DRAFT_3030 0.11 -0.1 341,592 - EX28DRAFT_3030 0.15 +0.9 341,621 + EX28DRAFT_3030 0.18 +0.0 341,622 - EX28DRAFT_3030 0.18 -0.0 341,671 - EX28DRAFT_3030 0.23 -2.3 341,687 + EX28DRAFT_3030 0.25 -0.3 341,750 + EX28DRAFT_3030 0.32 -0.8 341,750 + EX28DRAFT_3030 0.32 +0.5 341,750 + EX28DRAFT_3030 0.32 -0.1 341,751 - EX28DRAFT_3030 0.32 +0.9 341,751 - EX28DRAFT_3030 0.32 +1.3 341,751 - EX28DRAFT_3030 0.32 -0.1 341,751 - EX28DRAFT_3030 0.32 -1.5 341,751 - EX28DRAFT_3030 0.32 -0.6 341,800 + EX28DRAFT_3030 0.38 -0.1 341,927 - EX28DRAFT_3030 0.52 +0.2 342,035 - EX28DRAFT_3030 0.64 +0.1 342,035 - EX28DRAFT_3030 0.64 -0.4 342,080 + EX28DRAFT_3030 0.69 +0.2 342,168 + EX28DRAFT_3030 0.78 -0.1 342,171 - EX28DRAFT_3030 0.79 +0.6 342,215 + EX28DRAFT_3030 0.83 -0.0 342,215 + EX28DRAFT_3030 0.83 -0.3 342,216 - EX28DRAFT_3030 0.84 -0.1 342,216 - EX28DRAFT_3030 0.84 -0.3 342,352 - +0.2
Or see this region's nucleotide sequence