Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2955

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2953 and EX28DRAFT_2954 are separated by 76 nucleotidesEX28DRAFT_2954 and EX28DRAFT_2955 are separated by 70 nucleotidesEX28DRAFT_2955 and EX28DRAFT_2956 are separated by 124 nucleotidesEX28DRAFT_2956 and EX28DRAFT_2957 are separated by 23 nucleotides EX28DRAFT_2953: EX28DRAFT_2953 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 261,613 to 263,046 _2953 EX28DRAFT_2954: EX28DRAFT_2954 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 263,123 to 263,866 _2954 EX28DRAFT_2955: EX28DRAFT_2955 - glycine dehydrogenase (decarboxylating), at 263,937 to 266,810 _2955 EX28DRAFT_2956: EX28DRAFT_2956 - glycine cleavage system H protein, at 266,935 to 267,324 _2956 EX28DRAFT_2957: EX28DRAFT_2957 - glycine cleavage system T protein, at 267,348 to 268,442 _2957 Position (kb) 263 264 265 266 267Strain fitness (log2 ratio) -3 -2 -1 0 1at 262.938 kb on + strandat 262.943 kb on - strandat 263.010 kb on + strandat 263.010 kb on + strandat 263.081 kb on + strandat 263.082 kb on - strandat 263.092 kb on + strandat 263.093 kb on - strandat 263.144 kb on + strandat 263.159 kb on + strandat 263.298 kb on + strand, within EX28DRAFT_2954at 263.315 kb on + strand, within EX28DRAFT_2954at 263.316 kb on - strand, within EX28DRAFT_2954at 263.409 kb on + strand, within EX28DRAFT_2954at 263.409 kb on + strand, within EX28DRAFT_2954at 263.410 kb on - strand, within EX28DRAFT_2954at 263.410 kb on - strand, within EX28DRAFT_2954at 263.611 kb on + strand, within EX28DRAFT_2954at 263.714 kb on - strand, within EX28DRAFT_2954at 263.714 kb on - strand, within EX28DRAFT_2954at 263.758 kb on + strand, within EX28DRAFT_2954at 263.759 kb on - strand, within EX28DRAFT_2954at 263.759 kb on - strand, within EX28DRAFT_2954at 263.772 kb on + strand, within EX28DRAFT_2954at 263.791 kb on - strand, within EX28DRAFT_2954at 263.916 kb on + strandat 263.916 kb on + strandat 263.922 kb on - strandat 263.922 kb on - strandat 263.924 kb on + strandat 263.924 kb on + strandat 263.924 kb on + strandat 263.924 kb on + strandat 263.925 kb on - strandat 263.925 kb on - strandat 263.925 kb on - strandat 263.925 kb on - strandat 263.925 kb on - strandat 263.935 kb on + strandat 263.936 kb on - strandat 263.936 kb on - strandat 263.936 kb on - strandat 263.938 kb on + strandat 263.939 kb on - strandat 263.944 kb on + strandat 263.990 kb on - strandat 264.068 kb on - strandat 264.400 kb on + strand, within EX28DRAFT_2955at 264.401 kb on - strand, within EX28DRAFT_2955at 264.401 kb on - strand, within EX28DRAFT_2955at 264.401 kb on - strand, within EX28DRAFT_2955at 264.439 kb on + strand, within EX28DRAFT_2955at 264.439 kb on + strand, within EX28DRAFT_2955at 264.440 kb on - strand, within EX28DRAFT_2955at 264.440 kb on - strand, within EX28DRAFT_2955at 264.440 kb on - strand, within EX28DRAFT_2955at 264.440 kb on - strand, within EX28DRAFT_2955at 264.506 kb on - strand, within EX28DRAFT_2955at 264.737 kb on + strand, within EX28DRAFT_2955at 264.738 kb on - strand, within EX28DRAFT_2955at 264.738 kb on - strand, within EX28DRAFT_2955at 264.822 kb on - strand, within EX28DRAFT_2955at 264.833 kb on - strand, within EX28DRAFT_2955at 264.853 kb on + strand, within EX28DRAFT_2955at 265.337 kb on + strand, within EX28DRAFT_2955at 265.337 kb on + strand, within EX28DRAFT_2955at 265.338 kb on - strand, within EX28DRAFT_2955at 265.339 kb on + strand, within EX28DRAFT_2955at 265.339 kb on + strand, within EX28DRAFT_2955at 265.340 kb on - strand, within EX28DRAFT_2955at 265.544 kb on + strand, within EX28DRAFT_2955at 265.651 kb on + strand, within EX28DRAFT_2955at 265.670 kb on + strand, within EX28DRAFT_2955at 265.769 kb on - strand, within EX28DRAFT_2955at 265.805 kb on + strand, within EX28DRAFT_2955at 265.811 kb on + strand, within EX28DRAFT_2955at 265.811 kb on + strand, within EX28DRAFT_2955at 265.910 kb on + strand, within EX28DRAFT_2955at 265.910 kb on + strand, within EX28DRAFT_2955at 265.911 kb on - strand, within EX28DRAFT_2955at 265.911 kb on - strand, within EX28DRAFT_2955at 265.911 kb on - strand, within EX28DRAFT_2955at 265.922 kb on + strand, within EX28DRAFT_2955at 266.477 kb on - strand, within EX28DRAFT_2955at 266.477 kb on - strand, within EX28DRAFT_2955at 266.561 kb on - strandat 266.567 kb on + strandat 266.567 kb on + strandat 266.567 kb on + strandat 266.698 kb on - strandat 266.797 kb on - strandat 266.843 kb on - strandat 266.843 kb on - strandat 266.929 kb on - strandat 267.113 kb on + strand, within EX28DRAFT_2956at 267.113 kb on + strand, within EX28DRAFT_2956at 267.113 kb on + strand, within EX28DRAFT_2956at 267.113 kb on + strand, within EX28DRAFT_2956at 267.113 kb on + strand, within EX28DRAFT_2956at 267.113 kb on + strand, within EX28DRAFT_2956at 267.113 kb on + strand, within EX28DRAFT_2956at 267.114 kb on - strand, within EX28DRAFT_2956at 267.114 kb on - strand, within EX28DRAFT_2956at 267.114 kb on - strand, within EX28DRAFT_2956at 267.114 kb on - strand, within EX28DRAFT_2956at 267.251 kb on + strand, within EX28DRAFT_2956at 267.251 kb on + strand, within EX28DRAFT_2956at 267.736 kb on + strand, within EX28DRAFT_2957at 267.767 kb on + strand, within EX28DRAFT_2957

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
262,938 + +1.3
262,943 - -1.3
263,010 + +0.8
263,010 + +0.3
263,081 + -1.3
263,082 - -1.7
263,092 + +0.4
263,093 - -1.6
263,144 + +0.0
263,159 + +0.5
263,298 + EX28DRAFT_2954 0.24 -0.2
263,315 + EX28DRAFT_2954 0.26 -0.9
263,316 - EX28DRAFT_2954 0.26 -1.5
263,409 + EX28DRAFT_2954 0.38 -0.1
263,409 + EX28DRAFT_2954 0.38 +0.7
263,410 - EX28DRAFT_2954 0.39 -1.8
263,410 - EX28DRAFT_2954 0.39 -0.3
263,611 + EX28DRAFT_2954 0.66 -0.6
263,714 - EX28DRAFT_2954 0.79 +1.1
263,714 - EX28DRAFT_2954 0.79 +0.6
263,758 + EX28DRAFT_2954 0.85 -0.6
263,759 - EX28DRAFT_2954 0.85 -3.3
263,759 - EX28DRAFT_2954 0.85 -1.3
263,772 + EX28DRAFT_2954 0.87 -0.0
263,791 - EX28DRAFT_2954 0.90 -0.0
263,916 + -0.6
263,916 + +0.3
263,922 - +1.7
263,922 - +0.6
263,924 + +0.1
263,924 + -0.2
263,924 + -0.0
263,924 + +0.7
263,925 - +0.4
263,925 - +0.3
263,925 - -0.8
263,925 - -0.3
263,925 - -0.8
263,935 + -0.1
263,936 - +0.2
263,936 - -0.7
263,936 - +0.4
263,938 + +1.2
263,939 - +1.3
263,944 + -0.7
263,990 - +0.7
264,068 - +0.7
264,400 + EX28DRAFT_2955 0.16 -0.1
264,401 - EX28DRAFT_2955 0.16 -0.6
264,401 - EX28DRAFT_2955 0.16 +0.0
264,401 - EX28DRAFT_2955 0.16 +0.9
264,439 + EX28DRAFT_2955 0.17 -0.5
264,439 + EX28DRAFT_2955 0.17 -0.3
264,440 - EX28DRAFT_2955 0.18 +0.0
264,440 - EX28DRAFT_2955 0.18 +0.1
264,440 - EX28DRAFT_2955 0.18 +0.0
264,440 - EX28DRAFT_2955 0.18 +0.2
264,506 - EX28DRAFT_2955 0.20 +0.1
264,737 + EX28DRAFT_2955 0.28 +1.1
264,738 - EX28DRAFT_2955 0.28 +0.6
264,738 - EX28DRAFT_2955 0.28 -0.1
264,822 - EX28DRAFT_2955 0.31 +0.1
264,833 - EX28DRAFT_2955 0.31 +1.3
264,853 + EX28DRAFT_2955 0.32 -0.1
265,337 + EX28DRAFT_2955 0.49 -0.2
265,337 + EX28DRAFT_2955 0.49 +0.3
265,338 - EX28DRAFT_2955 0.49 -0.2
265,339 + EX28DRAFT_2955 0.49 -0.0
265,339 + EX28DRAFT_2955 0.49 +0.0
265,340 - EX28DRAFT_2955 0.49 +0.3
265,544 + EX28DRAFT_2955 0.56 +0.2
265,651 + EX28DRAFT_2955 0.60 -0.4
265,670 + EX28DRAFT_2955 0.60 -2.6
265,769 - EX28DRAFT_2955 0.64 -0.2
265,805 + EX28DRAFT_2955 0.65 -0.5
265,811 + EX28DRAFT_2955 0.65 -1.2
265,811 + EX28DRAFT_2955 0.65 +0.9
265,910 + EX28DRAFT_2955 0.69 -0.2
265,910 + EX28DRAFT_2955 0.69 -0.0
265,911 - EX28DRAFT_2955 0.69 -0.1
265,911 - EX28DRAFT_2955 0.69 +0.1
265,911 - EX28DRAFT_2955 0.69 -0.0
265,922 + EX28DRAFT_2955 0.69 -0.2
266,477 - EX28DRAFT_2955 0.88 -0.1
266,477 - EX28DRAFT_2955 0.88 +1.2
266,561 - -1.7
266,567 + -0.3
266,567 + -0.7
266,567 + -0.4
266,698 - +0.3
266,797 - -0.5
266,843 - -0.1
266,843 - -0.8
266,929 - -1.9
267,113 + EX28DRAFT_2956 0.46 -0.2
267,113 + EX28DRAFT_2956 0.46 -0.3
267,113 + EX28DRAFT_2956 0.46 -0.3
267,113 + EX28DRAFT_2956 0.46 -0.0
267,113 + EX28DRAFT_2956 0.46 -0.4
267,113 + EX28DRAFT_2956 0.46 -0.7
267,113 + EX28DRAFT_2956 0.46 -0.6
267,114 - EX28DRAFT_2956 0.46 -0.4
267,114 - EX28DRAFT_2956 0.46 -0.9
267,114 - EX28DRAFT_2956 0.46 -0.1
267,114 - EX28DRAFT_2956 0.46 +0.4
267,251 + EX28DRAFT_2956 0.81 +1.1
267,251 + EX28DRAFT_2956 0.81 -1.2
267,736 + EX28DRAFT_2957 0.35 -0.3
267,767 + EX28DRAFT_2957 0.38 -0.5

Or see this region's nucleotide sequence