Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2954

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2953 and EX28DRAFT_2954 are separated by 76 nucleotidesEX28DRAFT_2954 and EX28DRAFT_2955 are separated by 70 nucleotides EX28DRAFT_2953: EX28DRAFT_2953 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 261,613 to 263,046 _2953 EX28DRAFT_2954: EX28DRAFT_2954 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 263,123 to 263,866 _2954 EX28DRAFT_2955: EX28DRAFT_2955 - glycine dehydrogenase (decarboxylating), at 263,937 to 266,810 _2955 Position (kb) 263 264Strain fitness (log2 ratio) -3 -2 -1 0 1at 262.126 kb on + strand, within EX28DRAFT_2953at 262.208 kb on - strand, within EX28DRAFT_2953at 262.210 kb on - strand, within EX28DRAFT_2953at 262.240 kb on + strand, within EX28DRAFT_2953at 262.408 kb on + strand, within EX28DRAFT_2953at 262.438 kb on + strand, within EX28DRAFT_2953at 262.450 kb on + strand, within EX28DRAFT_2953at 262.450 kb on + strand, within EX28DRAFT_2953at 262.451 kb on - strand, within EX28DRAFT_2953at 262.527 kb on + strand, within EX28DRAFT_2953at 262.538 kb on - strand, within EX28DRAFT_2953at 262.541 kb on + strand, within EX28DRAFT_2953at 262.555 kb on + strand, within EX28DRAFT_2953at 262.555 kb on + strand, within EX28DRAFT_2953at 262.555 kb on + strand, within EX28DRAFT_2953at 262.555 kb on + strand, within EX28DRAFT_2953at 262.555 kb on + strand, within EX28DRAFT_2953at 262.556 kb on - strand, within EX28DRAFT_2953at 262.556 kb on - strand, within EX28DRAFT_2953at 262.556 kb on - strand, within EX28DRAFT_2953at 262.556 kb on - strand, within EX28DRAFT_2953at 262.556 kb on - strand, within EX28DRAFT_2953at 262.684 kb on + strand, within EX28DRAFT_2953at 262.702 kb on + strand, within EX28DRAFT_2953at 262.703 kb on - strand, within EX28DRAFT_2953at 262.728 kb on + strand, within EX28DRAFT_2953at 262.938 kb on + strandat 262.943 kb on - strandat 263.010 kb on + strandat 263.010 kb on + strandat 263.081 kb on + strandat 263.082 kb on - strandat 263.092 kb on + strandat 263.093 kb on - strandat 263.144 kb on + strandat 263.159 kb on + strandat 263.298 kb on + strand, within EX28DRAFT_2954at 263.315 kb on + strand, within EX28DRAFT_2954at 263.316 kb on - strand, within EX28DRAFT_2954at 263.409 kb on + strand, within EX28DRAFT_2954at 263.409 kb on + strand, within EX28DRAFT_2954at 263.410 kb on - strand, within EX28DRAFT_2954at 263.410 kb on - strand, within EX28DRAFT_2954at 263.611 kb on + strand, within EX28DRAFT_2954at 263.714 kb on - strand, within EX28DRAFT_2954at 263.714 kb on - strand, within EX28DRAFT_2954at 263.758 kb on + strand, within EX28DRAFT_2954at 263.759 kb on - strand, within EX28DRAFT_2954at 263.759 kb on - strand, within EX28DRAFT_2954at 263.772 kb on + strand, within EX28DRAFT_2954at 263.791 kb on - strand, within EX28DRAFT_2954at 263.916 kb on + strandat 263.916 kb on + strandat 263.922 kb on - strandat 263.922 kb on - strandat 263.924 kb on + strandat 263.924 kb on + strandat 263.924 kb on + strandat 263.924 kb on + strandat 263.925 kb on - strandat 263.925 kb on - strandat 263.925 kb on - strandat 263.925 kb on - strandat 263.925 kb on - strandat 263.935 kb on + strandat 263.936 kb on - strandat 263.936 kb on - strandat 263.936 kb on - strandat 263.938 kb on + strandat 263.939 kb on - strandat 263.944 kb on + strandat 263.990 kb on - strandat 264.068 kb on - strandat 264.400 kb on + strand, within EX28DRAFT_2955at 264.401 kb on - strand, within EX28DRAFT_2955at 264.401 kb on - strand, within EX28DRAFT_2955at 264.401 kb on - strand, within EX28DRAFT_2955at 264.439 kb on + strand, within EX28DRAFT_2955at 264.439 kb on + strand, within EX28DRAFT_2955at 264.440 kb on - strand, within EX28DRAFT_2955at 264.440 kb on - strand, within EX28DRAFT_2955at 264.440 kb on - strand, within EX28DRAFT_2955at 264.440 kb on - strand, within EX28DRAFT_2955at 264.506 kb on - strand, within EX28DRAFT_2955at 264.737 kb on + strand, within EX28DRAFT_2955at 264.738 kb on - strand, within EX28DRAFT_2955at 264.738 kb on - strand, within EX28DRAFT_2955at 264.822 kb on - strand, within EX28DRAFT_2955at 264.833 kb on - strand, within EX28DRAFT_2955at 264.853 kb on + strand, within EX28DRAFT_2955

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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262,126 + EX28DRAFT_2953 0.36 +0.1
262,208 - EX28DRAFT_2953 0.41 -0.8
262,210 - EX28DRAFT_2953 0.42 -0.8
262,240 + EX28DRAFT_2953 0.44 +0.2
262,408 + EX28DRAFT_2953 0.55 +0.4
262,438 + EX28DRAFT_2953 0.58 -0.1
262,450 + EX28DRAFT_2953 0.58 +0.4
262,450 + EX28DRAFT_2953 0.58 +0.0
262,451 - EX28DRAFT_2953 0.58 -0.1
262,527 + EX28DRAFT_2953 0.64 +0.2
262,538 - EX28DRAFT_2953 0.65 -0.3
262,541 + EX28DRAFT_2953 0.65 +0.8
262,555 + EX28DRAFT_2953 0.66 -0.2
262,555 + EX28DRAFT_2953 0.66 -0.5
262,555 + EX28DRAFT_2953 0.66 -0.1
262,555 + EX28DRAFT_2953 0.66 -0.4
262,555 + EX28DRAFT_2953 0.66 -0.1
262,556 - EX28DRAFT_2953 0.66 -0.0
262,556 - EX28DRAFT_2953 0.66 +0.2
262,556 - EX28DRAFT_2953 0.66 -0.8
262,556 - EX28DRAFT_2953 0.66 +0.2
262,556 - EX28DRAFT_2953 0.66 -0.6
262,684 + EX28DRAFT_2953 0.75 +0.4
262,702 + EX28DRAFT_2953 0.76 -0.3
262,703 - EX28DRAFT_2953 0.76 +0.3
262,728 + EX28DRAFT_2953 0.78 -0.7
262,938 + +1.3
262,943 - -1.3
263,010 + +0.8
263,010 + +0.3
263,081 + -1.3
263,082 - -1.7
263,092 + +0.4
263,093 - -1.6
263,144 + +0.0
263,159 + +0.5
263,298 + EX28DRAFT_2954 0.24 -0.2
263,315 + EX28DRAFT_2954 0.26 -0.9
263,316 - EX28DRAFT_2954 0.26 -1.5
263,409 + EX28DRAFT_2954 0.38 -0.1
263,409 + EX28DRAFT_2954 0.38 +0.7
263,410 - EX28DRAFT_2954 0.39 -1.8
263,410 - EX28DRAFT_2954 0.39 -0.3
263,611 + EX28DRAFT_2954 0.66 -0.6
263,714 - EX28DRAFT_2954 0.79 +1.1
263,714 - EX28DRAFT_2954 0.79 +0.6
263,758 + EX28DRAFT_2954 0.85 -0.6
263,759 - EX28DRAFT_2954 0.85 -3.3
263,759 - EX28DRAFT_2954 0.85 -1.3
263,772 + EX28DRAFT_2954 0.87 -0.0
263,791 - EX28DRAFT_2954 0.90 -0.0
263,916 + -0.6
263,916 + +0.3
263,922 - +1.7
263,922 - +0.6
263,924 + +0.1
263,924 + -0.2
263,924 + -0.0
263,924 + +0.7
263,925 - +0.4
263,925 - +0.3
263,925 - -0.8
263,925 - -0.3
263,925 - -0.8
263,935 + -0.1
263,936 - +0.2
263,936 - -0.7
263,936 - +0.4
263,938 + +1.2
263,939 - +1.3
263,944 + -0.7
263,990 - +0.7
264,068 - +0.7
264,400 + EX28DRAFT_2955 0.16 -0.1
264,401 - EX28DRAFT_2955 0.16 -0.6
264,401 - EX28DRAFT_2955 0.16 +0.0
264,401 - EX28DRAFT_2955 0.16 +0.9
264,439 + EX28DRAFT_2955 0.17 -0.5
264,439 + EX28DRAFT_2955 0.17 -0.3
264,440 - EX28DRAFT_2955 0.18 +0.0
264,440 - EX28DRAFT_2955 0.18 +0.1
264,440 - EX28DRAFT_2955 0.18 +0.0
264,440 - EX28DRAFT_2955 0.18 +0.2
264,506 - EX28DRAFT_2955 0.20 +0.1
264,737 + EX28DRAFT_2955 0.28 +1.1
264,738 - EX28DRAFT_2955 0.28 +0.6
264,738 - EX28DRAFT_2955 0.28 -0.1
264,822 - EX28DRAFT_2955 0.31 +0.1
264,833 - EX28DRAFT_2955 0.31 +1.3
264,853 + EX28DRAFT_2955 0.32 -0.1

Or see this region's nucleotide sequence