Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2939

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2936 and EX28DRAFT_2937 are separated by 22 nucleotidesEX28DRAFT_2937 and EX28DRAFT_2938 are separated by 554 nucleotidesEX28DRAFT_2938 and EX28DRAFT_2939 are separated by 80 nucleotidesEX28DRAFT_2939 and EX28DRAFT_2940 are separated by 163 nucleotidesEX28DRAFT_2940 and EX28DRAFT_2941 are separated by 38 nucleotides EX28DRAFT_2936: EX28DRAFT_2936 - Uracil DNA glycosylase superfamily, at 247,744 to 248,346 _2936 EX28DRAFT_2937: EX28DRAFT_2937 - hypothetical protein, at 248,369 to 248,614 _2937 EX28DRAFT_2938: EX28DRAFT_2938 - tRNA, at 249,169 to 249,242 _2938 EX28DRAFT_2939: EX28DRAFT_2939 - Membrane proteins related to metalloendopeptidases, at 249,323 to 250,066 _2939 EX28DRAFT_2940: EX28DRAFT_2940 - isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2), at 250,230 to 250,772 _2940 EX28DRAFT_2941: EX28DRAFT_2941 - Lysyl-tRNA synthetase (class II), at 250,811 to 252,328 _2941 Position (kb) 249 250 251Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 248.413 kb on - strand, within EX28DRAFT_2937at 248.414 kb on + strand, within EX28DRAFT_2937at 248.414 kb on + strand, within EX28DRAFT_2937at 248.415 kb on - strand, within EX28DRAFT_2937at 248.417 kb on - strand, within EX28DRAFT_2937at 248.417 kb on - strand, within EX28DRAFT_2937at 248.423 kb on + strand, within EX28DRAFT_2937at 248.424 kb on - strand, within EX28DRAFT_2937at 248.424 kb on - strand, within EX28DRAFT_2937at 248.509 kb on - strand, within EX28DRAFT_2937at 248.512 kb on + strand, within EX28DRAFT_2937at 248.513 kb on - strand, within EX28DRAFT_2937at 248.523 kb on + strand, within EX28DRAFT_2937at 248.590 kb on + strandat 248.590 kb on + strandat 248.627 kb on + strandat 248.631 kb on + strandat 248.683 kb on - strandat 248.701 kb on + strandat 248.710 kb on + strandat 248.711 kb on - strandat 248.844 kb on - strandat 248.864 kb on + strandat 248.865 kb on - strandat 248.865 kb on - strandat 248.931 kb on + strandat 248.971 kb on - strandat 249.081 kb on + strandat 249.093 kb on + strandat 249.098 kb on + strandat 249.099 kb on - strandat 249.223 kb on + strand, within EX28DRAFT_2938at 249.264 kb on + strandat 249.264 kb on + strandat 249.264 kb on + strandat 249.283 kb on + strandat 249.283 kb on + strandat 249.284 kb on - strandat 249.284 kb on - strandat 249.388 kb on - strandat 249.505 kb on - strand, within EX28DRAFT_2939at 249.532 kb on + strand, within EX28DRAFT_2939at 249.532 kb on + strand, within EX28DRAFT_2939at 249.532 kb on + strand, within EX28DRAFT_2939at 249.533 kb on - strand, within EX28DRAFT_2939at 249.533 kb on - strand, within EX28DRAFT_2939at 249.576 kb on + strand, within EX28DRAFT_2939at 249.577 kb on - strand, within EX28DRAFT_2939at 249.603 kb on + strand, within EX28DRAFT_2939at 249.846 kb on + strand, within EX28DRAFT_2939at 249.846 kb on + strand, within EX28DRAFT_2939at 249.847 kb on - strand, within EX28DRAFT_2939at 249.847 kb on - strand, within EX28DRAFT_2939at 249.957 kb on + strand, within EX28DRAFT_2939at 249.958 kb on - strand, within EX28DRAFT_2939at 249.958 kb on - strand, within EX28DRAFT_2939at 250.004 kb on + strandat 250.098 kb on + strandat 250.098 kb on + strandat 250.099 kb on - strandat 250.119 kb on + strandat 250.164 kb on - strandat 250.174 kb on + strandat 250.175 kb on - strandat 250.175 kb on - strandat 250.176 kb on + strandat 250.176 kb on + strandat 250.251 kb on - strandat 250.312 kb on + strand, within EX28DRAFT_2940at 250.312 kb on + strand, within EX28DRAFT_2940at 250.312 kb on + strand, within EX28DRAFT_2940at 250.312 kb on + strand, within EX28DRAFT_2940at 250.313 kb on - strand, within EX28DRAFT_2940at 250.313 kb on - strand, within EX28DRAFT_2940at 250.313 kb on - strand, within EX28DRAFT_2940at 250.316 kb on + strand, within EX28DRAFT_2940at 250.647 kb on + strand, within EX28DRAFT_2940at 250.647 kb on + strand, within EX28DRAFT_2940at 250.706 kb on + strand, within EX28DRAFT_2940at 250.797 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
248,413 - EX28DRAFT_2937 0.18 +0.1
248,414 + EX28DRAFT_2937 0.18 +0.3
248,414 + EX28DRAFT_2937 0.18 -1.2
248,415 - EX28DRAFT_2937 0.19 -1.2
248,417 - EX28DRAFT_2937 0.20 -0.2
248,417 - EX28DRAFT_2937 0.20 -0.3
248,423 + EX28DRAFT_2937 0.22 -0.8
248,424 - EX28DRAFT_2937 0.22 -0.1
248,424 - EX28DRAFT_2937 0.22 +0.0
248,509 - EX28DRAFT_2937 0.57 -0.9
248,512 + EX28DRAFT_2937 0.58 -0.6
248,513 - EX28DRAFT_2937 0.59 +0.0
248,523 + EX28DRAFT_2937 0.63 -0.2
248,590 + -0.1
248,590 + -0.2
248,627 + +0.3
248,631 + -0.0
248,683 - -0.5
248,701 + -0.9
248,710 + -0.5
248,711 - -0.5
248,844 - -0.4
248,864 + -0.3
248,865 - -0.1
248,865 - -0.5
248,931 + +0.0
248,971 - +4.6
249,081 + +0.3
249,093 + -0.2
249,098 + -1.8
249,099 - -0.3
249,223 + EX28DRAFT_2938 0.73 -0.8
249,264 + +0.2
249,264 + -1.7
249,264 + +0.6
249,283 + -0.0
249,283 + +1.0
249,284 - +0.3
249,284 - +0.6
249,388 - -1.2
249,505 - EX28DRAFT_2939 0.24 +0.1
249,532 + EX28DRAFT_2939 0.28 +0.0
249,532 + EX28DRAFT_2939 0.28 +0.3
249,532 + EX28DRAFT_2939 0.28 -0.6
249,533 - EX28DRAFT_2939 0.28 -0.7
249,533 - EX28DRAFT_2939 0.28 -1.1
249,576 + EX28DRAFT_2939 0.34 -0.1
249,577 - EX28DRAFT_2939 0.34 -1.0
249,603 + EX28DRAFT_2939 0.38 -1.9
249,846 + EX28DRAFT_2939 0.70 +1.0
249,846 + EX28DRAFT_2939 0.70 +0.4
249,847 - EX28DRAFT_2939 0.70 +0.6
249,847 - EX28DRAFT_2939 0.70 +0.5
249,957 + EX28DRAFT_2939 0.85 -0.0
249,958 - EX28DRAFT_2939 0.85 +0.1
249,958 - EX28DRAFT_2939 0.85 -0.3
250,004 + +0.1
250,098 + +0.2
250,098 + +0.3
250,099 - -0.2
250,119 + -0.0
250,164 - +0.0
250,174 + +0.8
250,175 - +0.2
250,175 - +0.3
250,176 + -0.2
250,176 + +0.1
250,251 - -1.0
250,312 + EX28DRAFT_2940 0.15 +0.5
250,312 + EX28DRAFT_2940 0.15 -0.8
250,312 + EX28DRAFT_2940 0.15 -0.6
250,312 + EX28DRAFT_2940 0.15 -0.2
250,313 - EX28DRAFT_2940 0.15 -0.8
250,313 - EX28DRAFT_2940 0.15 -0.1
250,313 - EX28DRAFT_2940 0.15 -0.7
250,316 + EX28DRAFT_2940 0.16 -0.2
250,647 + EX28DRAFT_2940 0.77 -0.3
250,647 + EX28DRAFT_2940 0.77 -0.2
250,706 + EX28DRAFT_2940 0.88 -0.9
250,797 + -0.1

Or see this region's nucleotide sequence