Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2924 and EX28DRAFT_2925 are separated by 90 nucleotides EX28DRAFT_2925 and EX28DRAFT_2926 are separated by 119 nucleotides
EX28DRAFT_2924: EX28DRAFT_2924 - Transcriptional regulator, at 235,719 to 236,585
_2924
EX28DRAFT_2925: EX28DRAFT_2925 - Predicted membrane protein, at 236,676 to 237,152
_2925
EX28DRAFT_2926: EX28DRAFT_2926 - Amino acid permeases, at 237,272 to 238,501
_2926
Position (kb) 236
237
238 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 235.684 kb on + strand at 235.738 kb on + strand at 235.739 kb on - strand at 235.739 kb on - strand at 235.984 kb on + strand, within EX28DRAFT_2924 at 235.984 kb on + strand, within EX28DRAFT_2924 at 235.985 kb on - strand, within EX28DRAFT_2924 at 236.071 kb on + strand, within EX28DRAFT_2924 at 236.072 kb on - strand, within EX28DRAFT_2924 at 236.072 kb on - strand, within EX28DRAFT_2924 at 236.103 kb on + strand, within EX28DRAFT_2924 at 236.578 kb on + strand at 236.591 kb on - strand at 236.595 kb on - strand at 236.674 kb on + strand at 236.675 kb on - strand at 236.684 kb on + strand at 236.684 kb on + strand at 236.685 kb on - strand at 236.685 kb on - strand at 236.690 kb on + strand at 236.690 kb on + strand at 236.837 kb on + strand, within EX28DRAFT_2925 at 236.838 kb on - strand, within EX28DRAFT_2925 at 236.870 kb on + strand, within EX28DRAFT_2925 at 236.870 kb on + strand, within EX28DRAFT_2925 at 236.871 kb on - strand, within EX28DRAFT_2925 at 236.871 kb on - strand, within EX28DRAFT_2925 at 236.871 kb on - strand, within EX28DRAFT_2925 at 236.874 kb on + strand, within EX28DRAFT_2925 at 236.874 kb on + strand, within EX28DRAFT_2925 at 236.874 kb on + strand, within EX28DRAFT_2925 at 236.877 kb on - strand, within EX28DRAFT_2925 at 236.969 kb on + strand, within EX28DRAFT_2925 at 237.066 kb on + strand, within EX28DRAFT_2925 at 237.067 kb on - strand, within EX28DRAFT_2925 at 237.067 kb on - strand, within EX28DRAFT_2925 at 237.067 kb on - strand, within EX28DRAFT_2925 at 237.078 kb on + strand, within EX28DRAFT_2925 at 237.078 kb on + strand, within EX28DRAFT_2925 at 237.079 kb on - strand, within EX28DRAFT_2925 at 237.079 kb on - strand, within EX28DRAFT_2925 at 237.079 kb on - strand, within EX28DRAFT_2925 at 237.079 kb on - strand, within EX28DRAFT_2925 at 237.216 kb on + strand at 237.216 kb on + strand at 237.217 kb on - strand at 237.217 kb on - strand at 237.220 kb on + strand at 237.220 kb on + strand at 237.221 kb on - strand at 237.221 kb on - strand at 237.221 kb on - strand at 237.271 kb on - strand at 237.414 kb on - strand, within EX28DRAFT_2926 at 237.425 kb on + strand, within EX28DRAFT_2926 at 237.425 kb on + strand, within EX28DRAFT_2926 at 237.426 kb on - strand, within EX28DRAFT_2926 at 237.510 kb on - strand, within EX28DRAFT_2926 at 237.513 kb on - strand, within EX28DRAFT_2926 at 237.548 kb on + strand, within EX28DRAFT_2926 at 237.581 kb on + strand, within EX28DRAFT_2926 at 237.779 kb on + strand, within EX28DRAFT_2926 at 237.780 kb on - strand, within EX28DRAFT_2926 at 237.780 kb on - strand, within EX28DRAFT_2926 at 237.955 kb on + strand, within EX28DRAFT_2926 at 238.050 kb on - strand, within EX28DRAFT_2926 at 238.050 kb on - strand, within EX28DRAFT_2926
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 235,684 + -0.2 235,738 + -0.1 235,739 - -0.2 235,739 - +0.1 235,984 + EX28DRAFT_2924 0.31 -0.8 235,984 + EX28DRAFT_2924 0.31 +0.2 235,985 - EX28DRAFT_2924 0.31 -0.7 236,071 + EX28DRAFT_2924 0.41 -0.2 236,072 - EX28DRAFT_2924 0.41 +1.0 236,072 - EX28DRAFT_2924 0.41 +0.5 236,103 + EX28DRAFT_2924 0.44 +0.1 236,578 + +0.2 236,591 - +0.3 236,595 - +0.2 236,674 + -0.4 236,675 - +0.1 236,684 + -0.5 236,684 + -0.6 236,685 - -0.1 236,685 - -0.6 236,690 + -0.3 236,690 + +0.4 236,837 + EX28DRAFT_2925 0.34 +0.4 236,838 - EX28DRAFT_2925 0.34 +0.0 236,870 + EX28DRAFT_2925 0.41 +0.0 236,870 + EX28DRAFT_2925 0.41 -1.8 236,871 - EX28DRAFT_2925 0.41 -0.4 236,871 - EX28DRAFT_2925 0.41 +0.6 236,871 - EX28DRAFT_2925 0.41 +0.8 236,874 + EX28DRAFT_2925 0.42 -0.6 236,874 + EX28DRAFT_2925 0.42 -0.0 236,874 + EX28DRAFT_2925 0.42 -0.9 236,877 - EX28DRAFT_2925 0.42 -1.3 236,969 + EX28DRAFT_2925 0.61 +1.4 237,066 + EX28DRAFT_2925 0.82 -1.5 237,067 - EX28DRAFT_2925 0.82 +0.2 237,067 - EX28DRAFT_2925 0.82 -0.9 237,067 - EX28DRAFT_2925 0.82 -0.6 237,078 + EX28DRAFT_2925 0.84 -0.0 237,078 + EX28DRAFT_2925 0.84 -0.5 237,079 - EX28DRAFT_2925 0.84 -0.0 237,079 - EX28DRAFT_2925 0.84 +1.5 237,079 - EX28DRAFT_2925 0.84 -1.2 237,079 - EX28DRAFT_2925 0.84 -0.3 237,216 + +0.0 237,216 + +0.3 237,217 - -2.8 237,217 - -0.6 237,220 + -0.3 237,220 + +0.1 237,221 - +0.3 237,221 - +0.0 237,221 - -0.2 237,271 - -0.1 237,414 - EX28DRAFT_2926 0.12 -1.5 237,425 + EX28DRAFT_2926 0.12 +0.4 237,425 + EX28DRAFT_2926 0.12 -0.0 237,426 - EX28DRAFT_2926 0.13 +0.3 237,510 - EX28DRAFT_2926 0.19 -0.9 237,513 - EX28DRAFT_2926 0.20 +0.2 237,548 + EX28DRAFT_2926 0.22 +0.0 237,581 + EX28DRAFT_2926 0.25 +0.1 237,779 + EX28DRAFT_2926 0.41 -1.1 237,780 - EX28DRAFT_2926 0.41 +0.2 237,780 - EX28DRAFT_2926 0.41 +0.1 237,955 + EX28DRAFT_2926 0.56 +0.3 238,050 - EX28DRAFT_2926 0.63 +1.8 238,050 - EX28DRAFT_2926 0.63 +0.0
Or see this region's nucleotide sequence