Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2893

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2892 and EX28DRAFT_2893 are separated by 212 nucleotidesEX28DRAFT_2893 and EX28DRAFT_2894 are separated by 34 nucleotides EX28DRAFT_2892: EX28DRAFT_2892 - N-acetylmuramoyl-L-alanine amidase, at 195,589 to 196,857 _2892 EX28DRAFT_2893: EX28DRAFT_2893 - N-acetylglutamate synthase (EC 2.3.1.1), at 197,070 to 198,401 _2893 EX28DRAFT_2894: EX28DRAFT_2894 - DNA helicase/exodeoxyribonuclease V, alpha subunit (EC 3.1.11.5), at 198,436 to 200,256 _2894 Position (kb) 197 198 199Strain fitness (log2 ratio) -3 -2 -1 0 1at 196.119 kb on + strand, within EX28DRAFT_2892at 196.137 kb on + strand, within EX28DRAFT_2892at 196.137 kb on + strand, within EX28DRAFT_2892at 196.140 kb on - strand, within EX28DRAFT_2892at 196.140 kb on - strand, within EX28DRAFT_2892at 196.149 kb on + strand, within EX28DRAFT_2892at 196.361 kb on + strand, within EX28DRAFT_2892at 196.395 kb on + strand, within EX28DRAFT_2892at 196.440 kb on + strand, within EX28DRAFT_2892at 196.441 kb on - strand, within EX28DRAFT_2892at 196.664 kb on + strand, within EX28DRAFT_2892at 196.665 kb on - strand, within EX28DRAFT_2892at 196.704 kb on - strand, within EX28DRAFT_2892at 196.704 kb on - strand, within EX28DRAFT_2892at 196.801 kb on + strandat 196.874 kb on - strandat 196.928 kb on + strandat 196.929 kb on - strandat 196.929 kb on - strandat 196.949 kb on - strandat 197.084 kb on + strandat 197.085 kb on - strandat 197.085 kb on - strandat 197.085 kb on - strandat 197.125 kb on - strandat 197.256 kb on + strand, within EX28DRAFT_2893at 197.256 kb on + strand, within EX28DRAFT_2893at 197.257 kb on - strand, within EX28DRAFT_2893at 197.257 kb on - strand, within EX28DRAFT_2893at 197.423 kb on + strand, within EX28DRAFT_2893at 197.423 kb on + strand, within EX28DRAFT_2893at 197.549 kb on + strand, within EX28DRAFT_2893at 197.549 kb on + strand, within EX28DRAFT_2893at 197.550 kb on - strand, within EX28DRAFT_2893at 197.877 kb on + strand, within EX28DRAFT_2893at 198.189 kb on - strand, within EX28DRAFT_2893at 198.354 kb on + strandat 198.354 kb on + strandat 198.354 kb on + strandat 198.355 kb on - strandat 198.355 kb on - strandat 198.355 kb on - strandat 198.360 kb on + strandat 198.360 kb on + strandat 198.361 kb on - strandat 198.361 kb on - strandat 198.361 kb on - strandat 198.560 kb on + strandat 198.560 kb on + strandat 198.560 kb on + strandat 198.561 kb on - strandat 198.580 kb on + strandat 198.580 kb on + strandat 198.580 kb on + strandat 198.580 kb on + strandat 198.642 kb on + strand, within EX28DRAFT_2894at 198.643 kb on - strand, within EX28DRAFT_2894at 198.948 kb on - strand, within EX28DRAFT_2894at 198.982 kb on - strand, within EX28DRAFT_2894at 198.995 kb on - strand, within EX28DRAFT_2894at 198.995 kb on - strand, within EX28DRAFT_2894at 199.049 kb on + strand, within EX28DRAFT_2894at 199.084 kb on - strand, within EX28DRAFT_2894at 199.313 kb on + strand, within EX28DRAFT_2894

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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196,119 + EX28DRAFT_2892 0.42 -0.0
196,137 + EX28DRAFT_2892 0.43 +0.4
196,137 + EX28DRAFT_2892 0.43 +0.1
196,140 - EX28DRAFT_2892 0.43 -0.1
196,140 - EX28DRAFT_2892 0.43 -0.4
196,149 + EX28DRAFT_2892 0.44 -0.0
196,361 + EX28DRAFT_2892 0.61 -0.9
196,395 + EX28DRAFT_2892 0.64 -0.1
196,440 + EX28DRAFT_2892 0.67 +0.6
196,441 - EX28DRAFT_2892 0.67 -0.1
196,664 + EX28DRAFT_2892 0.85 -0.3
196,665 - EX28DRAFT_2892 0.85 -0.1
196,704 - EX28DRAFT_2892 0.88 -0.4
196,704 - EX28DRAFT_2892 0.88 +0.1
196,801 + -0.0
196,874 - -0.4
196,928 + +0.1
196,929 - +0.6
196,929 - -0.2
196,949 - +0.1
197,084 + -0.0
197,085 - -0.8
197,085 - -2.3
197,085 - +1.0
197,125 - -0.6
197,256 + EX28DRAFT_2893 0.14 -0.7
197,256 + EX28DRAFT_2893 0.14 -2.1
197,257 - EX28DRAFT_2893 0.14 +0.2
197,257 - EX28DRAFT_2893 0.14 -2.2
197,423 + EX28DRAFT_2893 0.27 -2.0
197,423 + EX28DRAFT_2893 0.27 -1.7
197,549 + EX28DRAFT_2893 0.36 -2.5
197,549 + EX28DRAFT_2893 0.36 -2.4
197,550 - EX28DRAFT_2893 0.36 -2.3
197,877 + EX28DRAFT_2893 0.61 -0.0
198,189 - EX28DRAFT_2893 0.84 +0.4
198,354 + -2.7
198,354 + -3.6
198,354 + -2.1
198,355 - -1.9
198,355 - -2.0
198,355 - -2.4
198,360 + -2.3
198,360 + -1.5
198,361 - -1.4
198,361 - -0.9
198,361 - -0.4
198,560 + +1.0
198,560 + -0.2
198,560 + +0.1
198,561 - -0.2
198,580 + +1.1
198,580 + +0.2
198,580 + -0.8
198,580 + -0.5
198,642 + EX28DRAFT_2894 0.11 -1.7
198,643 - EX28DRAFT_2894 0.11 +0.1
198,948 - EX28DRAFT_2894 0.28 -1.0
198,982 - EX28DRAFT_2894 0.30 +1.2
198,995 - EX28DRAFT_2894 0.31 +0.5
198,995 - EX28DRAFT_2894 0.31 -0.4
199,049 + EX28DRAFT_2894 0.34 -1.7
199,084 - EX28DRAFT_2894 0.36 +0.2
199,313 + EX28DRAFT_2894 0.48 -0.1

Or see this region's nucleotide sequence