Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2886 and EX28DRAFT_2887 overlap by 1 nucleotides EX28DRAFT_2887 and EX28DRAFT_2888 overlap by 10 nucleotides EX28DRAFT_2888 and EX28DRAFT_2889 are separated by 75 nucleotides
EX28DRAFT_2886: EX28DRAFT_2886 - cysteine desulfurase, catalytic subunit CsdA, at 191,473 to 192,678
_2886
EX28DRAFT_2887: EX28DRAFT_2887 - cysteine desulfurase, sulfur acceptor subunit CsdE, at 192,678 to 193,124
_2887
EX28DRAFT_2888: EX28DRAFT_2888 - Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1, at 193,115 to 193,921
_2888
EX28DRAFT_2889: EX28DRAFT_2889 - Membrane-bound lytic murein transglycosylase, at 193,997 to 195,094
_2889
Position (kb) 193
194 Strain fitness (log2 ratio) -2
-1
0
1 at 192.119 kb on - strand, within EX28DRAFT_2886 at 192.135 kb on + strand, within EX28DRAFT_2886 at 192.135 kb on + strand, within EX28DRAFT_2886 at 192.135 kb on + strand, within EX28DRAFT_2886 at 192.136 kb on - strand, within EX28DRAFT_2886 at 192.136 kb on - strand, within EX28DRAFT_2886 at 192.610 kb on - strand at 192.612 kb on + strand at 192.665 kb on + strand at 192.666 kb on - strand at 192.684 kb on - strand at 192.737 kb on - strand, within EX28DRAFT_2887 at 192.773 kb on + strand, within EX28DRAFT_2887 at 192.774 kb on - strand, within EX28DRAFT_2887 at 192.777 kb on + strand, within EX28DRAFT_2887 at 192.850 kb on + strand, within EX28DRAFT_2887 at 192.851 kb on - strand, within EX28DRAFT_2887 at 192.851 kb on - strand, within EX28DRAFT_2887 at 193.551 kb on + strand, within EX28DRAFT_2888 at 193.551 kb on + strand, within EX28DRAFT_2888 at 193.552 kb on - strand, within EX28DRAFT_2888 at 193.557 kb on + strand, within EX28DRAFT_2888 at 193.558 kb on - strand, within EX28DRAFT_2888 at 193.558 kb on - strand, within EX28DRAFT_2888 at 193.574 kb on - strand, within EX28DRAFT_2888 at 193.751 kb on - strand, within EX28DRAFT_2888 at 193.865 kb on + strand at 193.866 kb on - strand at 193.922 kb on - strand at 193.922 kb on - strand at 193.935 kb on + strand at 193.935 kb on + strand at 193.935 kb on + strand at 193.936 kb on - strand at 193.936 kb on - strand at 193.968 kb on + strand at 193.969 kb on - strand at 193.969 kb on - strand at 194.064 kb on + strand at 194.064 kb on + strand at 194.065 kb on - strand at 194.098 kb on + strand at 194.106 kb on + strand at 194.106 kb on + strand at 194.107 kb on - strand, within EX28DRAFT_2889 at 194.107 kb on - strand, within EX28DRAFT_2889 at 194.194 kb on + strand, within EX28DRAFT_2889 at 194.261 kb on + strand, within EX28DRAFT_2889 at 194.496 kb on + strand, within EX28DRAFT_2889 at 194.496 kb on + strand, within EX28DRAFT_2889 at 194.497 kb on - strand, within EX28DRAFT_2889 at 194.538 kb on + strand, within EX28DRAFT_2889 at 194.589 kb on + strand, within EX28DRAFT_2889 at 194.602 kb on - strand, within EX28DRAFT_2889 at 194.668 kb on + strand, within EX28DRAFT_2889 at 194.673 kb on + strand, within EX28DRAFT_2889 at 194.674 kb on - strand, within EX28DRAFT_2889 at 194.677 kb on + strand, within EX28DRAFT_2889 at 194.678 kb on - strand, within EX28DRAFT_2889 at 194.730 kb on + strand, within EX28DRAFT_2889 at 194.730 kb on + strand, within EX28DRAFT_2889 at 194.806 kb on + strand, within EX28DRAFT_2889 at 194.806 kb on + strand, within EX28DRAFT_2889 at 194.853 kb on + strand, within EX28DRAFT_2889 at 194.853 kb on + strand, within EX28DRAFT_2889 at 194.854 kb on - strand, within EX28DRAFT_2889 at 194.854 kb on - strand, within EX28DRAFT_2889 at 194.860 kb on + strand, within EX28DRAFT_2889 at 194.874 kb on + strand, within EX28DRAFT_2889
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 192,119 - EX28DRAFT_2886 0.54 +0.1 192,135 + EX28DRAFT_2886 0.55 +1.0 192,135 + EX28DRAFT_2886 0.55 -0.6 192,135 + EX28DRAFT_2886 0.55 +0.7 192,136 - EX28DRAFT_2886 0.55 +0.2 192,136 - EX28DRAFT_2886 0.55 -0.2 192,610 - -0.2 192,612 + -0.4 192,665 + +0.5 192,666 - -0.4 192,684 - +0.2 192,737 - EX28DRAFT_2887 0.13 -0.2 192,773 + EX28DRAFT_2887 0.21 +0.2 192,774 - EX28DRAFT_2887 0.21 +0.1 192,777 + EX28DRAFT_2887 0.22 -0.3 192,850 + EX28DRAFT_2887 0.38 -1.0 192,851 - EX28DRAFT_2887 0.39 -0.5 192,851 - EX28DRAFT_2887 0.39 +0.3 193,551 + EX28DRAFT_2888 0.54 +0.4 193,551 + EX28DRAFT_2888 0.54 -0.6 193,552 - EX28DRAFT_2888 0.54 -2.6 193,557 + EX28DRAFT_2888 0.55 -0.9 193,558 - EX28DRAFT_2888 0.55 +0.4 193,558 - EX28DRAFT_2888 0.55 -1.6 193,574 - EX28DRAFT_2888 0.57 -0.2 193,751 - EX28DRAFT_2888 0.79 -1.9 193,865 + -0.6 193,866 - -0.1 193,922 - +0.2 193,922 - +0.3 193,935 + +0.1 193,935 + -0.2 193,935 + -0.1 193,936 - -0.0 193,936 - -0.4 193,968 + -0.5 193,969 - +0.6 193,969 - -0.0 194,064 + -0.2 194,064 + -1.1 194,065 - -0.1 194,098 + -0.9 194,106 + -0.1 194,106 + +1.0 194,107 - EX28DRAFT_2889 0.10 -0.2 194,107 - EX28DRAFT_2889 0.10 -0.0 194,194 + EX28DRAFT_2889 0.18 +0.3 194,261 + EX28DRAFT_2889 0.24 -0.4 194,496 + EX28DRAFT_2889 0.45 -1.3 194,496 + EX28DRAFT_2889 0.45 -0.6 194,497 - EX28DRAFT_2889 0.46 -0.0 194,538 + EX28DRAFT_2889 0.49 -0.8 194,589 + EX28DRAFT_2889 0.54 +0.2 194,602 - EX28DRAFT_2889 0.55 -0.2 194,668 + EX28DRAFT_2889 0.61 -0.8 194,673 + EX28DRAFT_2889 0.62 -0.2 194,674 - EX28DRAFT_2889 0.62 -0.1 194,677 + EX28DRAFT_2889 0.62 +0.2 194,678 - EX28DRAFT_2889 0.62 -0.1 194,730 + EX28DRAFT_2889 0.67 -0.8 194,730 + EX28DRAFT_2889 0.67 -0.3 194,806 + EX28DRAFT_2889 0.74 -0.5 194,806 + EX28DRAFT_2889 0.74 +1.5 194,853 + EX28DRAFT_2889 0.78 -0.2 194,853 + EX28DRAFT_2889 0.78 -0.4 194,854 - EX28DRAFT_2889 0.78 +0.0 194,854 - EX28DRAFT_2889 0.78 +0.4 194,860 + EX28DRAFT_2889 0.79 +0.1 194,874 + EX28DRAFT_2889 0.80 -0.3
Or see this region's nucleotide sequence