Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2867 and EX28DRAFT_2868 are separated by 77 nucleotides EX28DRAFT_2868 and EX28DRAFT_2869 are separated by 15 nucleotides
EX28DRAFT_2867: EX28DRAFT_2867 - glycerate kinase, at 173,329 to 174,468
_2867
EX28DRAFT_2868: EX28DRAFT_2868 - glucarate dehydratase, at 174,546 to 175,883
_2868
EX28DRAFT_2869: EX28DRAFT_2869 - L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily, at 175,899 to 177,239
_2869
Position (kb) 174
175
176 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 173.641 kb on + strand, within EX28DRAFT_2867 at 173.642 kb on - strand, within EX28DRAFT_2867 at 173.784 kb on - strand, within EX28DRAFT_2867 at 173.784 kb on - strand, within EX28DRAFT_2867 at 173.849 kb on - strand, within EX28DRAFT_2867 at 174.084 kb on + strand, within EX28DRAFT_2867 at 174.084 kb on + strand, within EX28DRAFT_2867 at 174.084 kb on + strand, within EX28DRAFT_2867 at 174.085 kb on - strand, within EX28DRAFT_2867 at 174.117 kb on + strand, within EX28DRAFT_2867 at 174.118 kb on - strand, within EX28DRAFT_2867 at 174.156 kb on + strand, within EX28DRAFT_2867 at 174.401 kb on - strand at 174.440 kb on + strand at 174.441 kb on - strand at 174.441 kb on - strand at 174.480 kb on - strand at 174.485 kb on + strand at 174.486 kb on - strand at 174.486 kb on - strand at 174.486 kb on - strand at 174.503 kb on + strand at 174.513 kb on - strand at 174.547 kb on + strand at 174.552 kb on + strand at 174.598 kb on + strand at 174.750 kb on - strand, within EX28DRAFT_2868 at 174.866 kb on + strand, within EX28DRAFT_2868 at 174.866 kb on + strand, within EX28DRAFT_2868 at 174.867 kb on - strand, within EX28DRAFT_2868 at 175.284 kb on - strand, within EX28DRAFT_2868 at 175.291 kb on + strand, within EX28DRAFT_2868 at 175.439 kb on - strand, within EX28DRAFT_2868 at 175.623 kb on - strand, within EX28DRAFT_2868 at 175.770 kb on - strand at 175.877 kb on + strand at 175.947 kb on + strand at 175.954 kb on + strand at 175.954 kb on + strand at 176.001 kb on - strand at 176.376 kb on - strand, within EX28DRAFT_2869 at 176.785 kb on + strand, within EX28DRAFT_2869 at 176.786 kb on - strand, within EX28DRAFT_2869 at 176.795 kb on - strand, within EX28DRAFT_2869
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 173,641 + EX28DRAFT_2867 0.27 +0.2 173,642 - EX28DRAFT_2867 0.27 +0.2 173,784 - EX28DRAFT_2867 0.40 -0.3 173,784 - EX28DRAFT_2867 0.40 +0.0 173,849 - EX28DRAFT_2867 0.46 +0.3 174,084 + EX28DRAFT_2867 0.66 -1.6 174,084 + EX28DRAFT_2867 0.66 -1.0 174,084 + EX28DRAFT_2867 0.66 -1.0 174,085 - EX28DRAFT_2867 0.66 -1.3 174,117 + EX28DRAFT_2867 0.69 -1.3 174,118 - EX28DRAFT_2867 0.69 -0.2 174,156 + EX28DRAFT_2867 0.73 -2.4 174,401 - -4.7 174,440 + -0.0 174,441 - -0.7 174,441 - +0.9 174,480 - +0.0 174,485 + +0.9 174,486 - +0.5 174,486 - -0.5 174,486 - +0.3 174,503 + -0.4 174,513 - +0.2 174,547 + -0.8 174,552 + -0.6 174,598 + +0.2 174,750 - EX28DRAFT_2868 0.15 +0.2 174,866 + EX28DRAFT_2868 0.24 +0.0 174,866 + EX28DRAFT_2868 0.24 +1.2 174,867 - EX28DRAFT_2868 0.24 -1.5 175,284 - EX28DRAFT_2868 0.55 +0.1 175,291 + EX28DRAFT_2868 0.56 +0.1 175,439 - EX28DRAFT_2868 0.67 +0.3 175,623 - EX28DRAFT_2868 0.80 +0.3 175,770 - +1.1 175,877 + -0.9 175,947 + -0.7 175,954 + -0.0 175,954 + +0.2 176,001 - -0.6 176,376 - EX28DRAFT_2869 0.36 -1.2 176,785 + EX28DRAFT_2869 0.66 -0.7 176,786 - EX28DRAFT_2869 0.66 +0.1 176,795 - EX28DRAFT_2869 0.67 -0.9
Or see this region's nucleotide sequence