Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2847

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2845 and EX28DRAFT_2846 are separated by 58 nucleotidesEX28DRAFT_2846 and EX28DRAFT_2847 overlap by 1 nucleotidesEX28DRAFT_2847 and EX28DRAFT_2848 are separated by 9 nucleotidesEX28DRAFT_2848 and EX28DRAFT_2849 are separated by 9 nucleotides EX28DRAFT_2845: EX28DRAFT_2845 - Protein of unknown function (DUF3561), at 146,155 to 146,481 _2845 EX28DRAFT_2846: EX28DRAFT_2846 - adenylyl-sulfate kinase, at 146,540 to 147,145 _2846 EX28DRAFT_2847: EX28DRAFT_2847 - sulfate adenylyltransferase, large subunit, at 147,145 to 148,569 _2847 EX28DRAFT_2848: EX28DRAFT_2848 - sulfate adenylyltransferase, small subunit, at 148,579 to 149,487 _2848 EX28DRAFT_2849: EX28DRAFT_2849 - uroporphyrin-III C-methyltransferase, at 149,497 to 150,855 _2849 Position (kb) 147 148 149Strain fitness (log2 ratio) -3 -2 -1 0 1at 146.145 kb on - strandat 146.156 kb on + strandat 146.226 kb on - strand, within EX28DRAFT_2845at 146.312 kb on + strand, within EX28DRAFT_2845at 146.313 kb on - strand, within EX28DRAFT_2845at 146.462 kb on + strandat 146.462 kb on + strandat 146.463 kb on - strandat 146.463 kb on - strandat 146.481 kb on + strandat 146.482 kb on - strandat 146.485 kb on + strandat 146.485 kb on + strandat 146.485 kb on + strandat 146.486 kb on - strandat 146.486 kb on - strandat 146.580 kb on - strandat 146.580 kb on - strandat 146.588 kb on + strandat 146.649 kb on + strand, within EX28DRAFT_2846at 146.650 kb on - strand, within EX28DRAFT_2846at 146.650 kb on - strand, within EX28DRAFT_2846at 146.704 kb on - strand, within EX28DRAFT_2846at 146.704 kb on - strand, within EX28DRAFT_2846at 146.825 kb on - strand, within EX28DRAFT_2846at 146.967 kb on + strand, within EX28DRAFT_2846at 146.968 kb on - strand, within EX28DRAFT_2846at 146.975 kb on + strand, within EX28DRAFT_2846at 147.147 kb on - strandat 147.274 kb on - strandat 147.315 kb on + strand, within EX28DRAFT_2847at 147.316 kb on - strand, within EX28DRAFT_2847at 147.506 kb on + strand, within EX28DRAFT_2847at 147.506 kb on + strand, within EX28DRAFT_2847at 147.506 kb on + strand, within EX28DRAFT_2847at 147.506 kb on + strand, within EX28DRAFT_2847at 147.506 kb on + strand, within EX28DRAFT_2847at 147.506 kb on + strand, within EX28DRAFT_2847at 147.507 kb on - strand, within EX28DRAFT_2847at 147.507 kb on - strand, within EX28DRAFT_2847at 147.619 kb on - strand, within EX28DRAFT_2847at 147.619 kb on - strand, within EX28DRAFT_2847at 147.748 kb on + strand, within EX28DRAFT_2847at 147.749 kb on - strand, within EX28DRAFT_2847at 147.815 kb on + strand, within EX28DRAFT_2847at 147.816 kb on - strand, within EX28DRAFT_2847at 147.902 kb on + strand, within EX28DRAFT_2847at 147.902 kb on + strand, within EX28DRAFT_2847at 147.902 kb on + strand, within EX28DRAFT_2847at 147.961 kb on + strand, within EX28DRAFT_2847at 147.962 kb on - strand, within EX28DRAFT_2847at 147.972 kb on + strand, within EX28DRAFT_2847at 148.035 kb on + strand, within EX28DRAFT_2847at 148.111 kb on - strand, within EX28DRAFT_2847at 148.111 kb on - strand, within EX28DRAFT_2847at 148.243 kb on - strand, within EX28DRAFT_2847at 148.518 kb on - strandat 148.557 kb on + strandat 148.558 kb on - strandat 148.893 kb on - strand, within EX28DRAFT_2848at 148.893 kb on - strand, within EX28DRAFT_2848at 148.976 kb on + strand, within EX28DRAFT_2848at 149.047 kb on - strand, within EX28DRAFT_2848at 149.047 kb on - strand, within EX28DRAFT_2848at 149.047 kb on - strand, within EX28DRAFT_2848at 149.047 kb on - strand, within EX28DRAFT_2848at 149.218 kb on - strand, within EX28DRAFT_2848at 149.241 kb on - strand, within EX28DRAFT_2848at 149.271 kb on - strand, within EX28DRAFT_2848at 149.387 kb on + strand, within EX28DRAFT_2848at 149.387 kb on + strand, within EX28DRAFT_2848at 149.387 kb on + strand, within EX28DRAFT_2848at 149.388 kb on - strand, within EX28DRAFT_2848at 149.388 kb on - strand, within EX28DRAFT_2848at 149.388 kb on - strand, within EX28DRAFT_2848at 149.388 kb on - strand, within EX28DRAFT_2848at 149.388 kb on - strand, within EX28DRAFT_2848at 149.440 kb on - strandat 149.469 kb on + strandat 149.470 kb on - strandat 149.470 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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146,145 - +1.0
146,156 + -2.9
146,226 - EX28DRAFT_2845 0.22 -0.6
146,312 + EX28DRAFT_2845 0.48 -0.0
146,313 - EX28DRAFT_2845 0.48 +0.8
146,462 + -0.4
146,462 + -1.2
146,463 - -0.4
146,463 - +1.0
146,481 + +0.3
146,482 - -0.3
146,485 + -0.2
146,485 + -0.7
146,485 + -0.4
146,486 - +0.9
146,486 - +0.1
146,580 - -2.0
146,580 - -1.7
146,588 + -3.4
146,649 + EX28DRAFT_2846 0.18 -1.4
146,650 - EX28DRAFT_2846 0.18 -2.2
146,650 - EX28DRAFT_2846 0.18 -2.2
146,704 - EX28DRAFT_2846 0.27 -1.7
146,704 - EX28DRAFT_2846 0.27 -1.7
146,825 - EX28DRAFT_2846 0.47 -1.6
146,967 + EX28DRAFT_2846 0.70 -3.7
146,968 - EX28DRAFT_2846 0.71 +1.0
146,975 + EX28DRAFT_2846 0.72 -2.4
147,147 - -1.0
147,274 - -1.1
147,315 + EX28DRAFT_2847 0.12 -1.1
147,316 - EX28DRAFT_2847 0.12 -0.7
147,506 + EX28DRAFT_2847 0.25 -0.5
147,506 + EX28DRAFT_2847 0.25 -1.5
147,506 + EX28DRAFT_2847 0.25 -1.2
147,506 + EX28DRAFT_2847 0.25 -1.0
147,506 + EX28DRAFT_2847 0.25 -0.5
147,506 + EX28DRAFT_2847 0.25 -0.0
147,507 - EX28DRAFT_2847 0.25 -0.7
147,507 - EX28DRAFT_2847 0.25 -0.5
147,619 - EX28DRAFT_2847 0.33 -0.1
147,619 - EX28DRAFT_2847 0.33 -0.7
147,748 + EX28DRAFT_2847 0.42 -1.0
147,749 - EX28DRAFT_2847 0.42 -1.2
147,815 + EX28DRAFT_2847 0.47 -1.2
147,816 - EX28DRAFT_2847 0.47 -1.8
147,902 + EX28DRAFT_2847 0.53 -1.4
147,902 + EX28DRAFT_2847 0.53 -0.1
147,902 + EX28DRAFT_2847 0.53 -1.1
147,961 + EX28DRAFT_2847 0.57 -2.9
147,962 - EX28DRAFT_2847 0.57 +0.4
147,972 + EX28DRAFT_2847 0.58 -1.4
148,035 + EX28DRAFT_2847 0.62 -1.2
148,111 - EX28DRAFT_2847 0.68 -0.9
148,111 - EX28DRAFT_2847 0.68 -3.3
148,243 - EX28DRAFT_2847 0.77 -2.4
148,518 - -0.8
148,557 + -2.1
148,558 - -0.9
148,893 - EX28DRAFT_2848 0.35 -2.0
148,893 - EX28DRAFT_2848 0.35 -1.8
148,976 + EX28DRAFT_2848 0.44 -3.3
149,047 - EX28DRAFT_2848 0.51 -1.5
149,047 - EX28DRAFT_2848 0.51 -2.8
149,047 - EX28DRAFT_2848 0.51 -2.3
149,047 - EX28DRAFT_2848 0.51 -0.2
149,218 - EX28DRAFT_2848 0.70 -3.6
149,241 - EX28DRAFT_2848 0.73 -2.0
149,271 - EX28DRAFT_2848 0.76 -0.8
149,387 + EX28DRAFT_2848 0.89 -1.8
149,387 + EX28DRAFT_2848 0.89 -1.1
149,387 + EX28DRAFT_2848 0.89 -1.4
149,388 - EX28DRAFT_2848 0.89 -1.6
149,388 - EX28DRAFT_2848 0.89 -0.9
149,388 - EX28DRAFT_2848 0.89 -0.4
149,388 - EX28DRAFT_2848 0.89 -1.3
149,388 - EX28DRAFT_2848 0.89 -1.6
149,440 - -1.9
149,469 + -0.9
149,470 - -1.7
149,470 - -2.4

Or see this region's nucleotide sequence