Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2835 and EX28DRAFT_2836 overlap by 4 nucleotides EX28DRAFT_2836 and EX28DRAFT_2837 are separated by 52 nucleotides EX28DRAFT_2837 and EX28DRAFT_2838 are separated by 59 nucleotides
EX28DRAFT_2835: EX28DRAFT_2835 - Arabinose efflux permease, at 138,138 to 139,340
_2835
EX28DRAFT_2836: EX28DRAFT_2836 - Uncharacterized protein conserved in bacteria, at 139,337 to 139,714
_2836
EX28DRAFT_2837: EX28DRAFT_2837 - RNA polymerase, sigma 38 subunit, RpoS, at 139,767 to 140,759
_2837
EX28DRAFT_2838: EX28DRAFT_2838 - Membrane proteins related to metalloendopeptidases, at 140,819 to 141,943
_2838
Position (kb)
139
140
141 Strain fitness (log2 ratio)
-2
-1
0
1 at 138.768 kb on + strand, within EX28DRAFT_2835 at 138.768 kb on + strand, within EX28DRAFT_2835 at 138.768 kb on + strand, within EX28DRAFT_2835 at 138.769 kb on - strand, within EX28DRAFT_2835 at 138.769 kb on - strand, within EX28DRAFT_2835 at 138.769 kb on - strand, within EX28DRAFT_2835 at 138.769 kb on - strand, within EX28DRAFT_2835 at 138.770 kb on + strand, within EX28DRAFT_2835 at 138.770 kb on + strand, within EX28DRAFT_2835 at 138.819 kb on + strand, within EX28DRAFT_2835 at 138.820 kb on - strand, within EX28DRAFT_2835 at 138.820 kb on - strand, within EX28DRAFT_2835 at 138.924 kb on - strand, within EX28DRAFT_2835 at 139.034 kb on + strand, within EX28DRAFT_2835 at 139.039 kb on + strand, within EX28DRAFT_2835 at 139.142 kb on + strand, within EX28DRAFT_2835 at 139.244 kb on + strand at 139.282 kb on - strand at 139.295 kb on + strand at 139.301 kb on + strand at 139.301 kb on + strand at 139.301 kb on + strand at 139.481 kb on + strand, within EX28DRAFT_2836 at 139.554 kb on + strand, within EX28DRAFT_2836 at 139.555 kb on - strand, within EX28DRAFT_2836 at 139.706 kb on - strand at 140.102 kb on + strand, within EX28DRAFT_2837 at 140.102 kb on + strand, within EX28DRAFT_2837 at 140.103 kb on - strand, within EX28DRAFT_2837 at 140.126 kb on + strand, within EX28DRAFT_2837 at 140.126 kb on + strand, within EX28DRAFT_2837 at 140.199 kb on - strand, within EX28DRAFT_2837 at 140.286 kb on - strand, within EX28DRAFT_2837 at 140.286 kb on - strand, within EX28DRAFT_2837 at 140.286 kb on - strand, within EX28DRAFT_2837 at 140.385 kb on + strand, within EX28DRAFT_2837 at 140.385 kb on + strand, within EX28DRAFT_2837 at 140.386 kb on - strand, within EX28DRAFT_2837 at 140.527 kb on + strand, within EX28DRAFT_2837 at 140.579 kb on - strand, within EX28DRAFT_2837 at 140.579 kb on - strand, within EX28DRAFT_2837 at 140.598 kb on + strand, within EX28DRAFT_2837 at 140.667 kb on + strand at 140.668 kb on - strand at 140.671 kb on - strand at 140.727 kb on + strand at 140.760 kb on - strand at 140.760 kb on - strand at 140.890 kb on + strand at 140.939 kb on - strand, within EX28DRAFT_2838 at 140.983 kb on - strand, within EX28DRAFT_2838 at 140.995 kb on - strand, within EX28DRAFT_2838 at 141.005 kb on - strand, within EX28DRAFT_2838 at 141.017 kb on - strand, within EX28DRAFT_2838 at 141.019 kb on + strand, within EX28DRAFT_2838 at 141.020 kb on - strand, within EX28DRAFT_2838 at 141.121 kb on + strand, within EX28DRAFT_2838 at 141.208 kb on + strand, within EX28DRAFT_2838 at 141.209 kb on - strand, within EX28DRAFT_2838 at 141.209 kb on - strand, within EX28DRAFT_2838 at 141.283 kb on + strand, within EX28DRAFT_2838 at 141.287 kb on - strand, within EX28DRAFT_2838 at 141.305 kb on - strand, within EX28DRAFT_2838 at 141.337 kb on + strand, within EX28DRAFT_2838 at 141.386 kb on - strand, within EX28DRAFT_2838 at 141.440 kb on - strand, within EX28DRAFT_2838 at 141.561 kb on + strand, within EX28DRAFT_2838 at 141.561 kb on + strand, within EX28DRAFT_2838 at 141.562 kb on - strand, within EX28DRAFT_2838 at 141.590 kb on - strand, within EX28DRAFT_2838 at 141.591 kb on + strand, within EX28DRAFT_2838 at 141.591 kb on + strand, within EX28DRAFT_2838 at 141.591 kb on + strand, within EX28DRAFT_2838 at 141.592 kb on - strand, within EX28DRAFT_2838 at 141.609 kb on + strand, within EX28DRAFT_2838 at 141.645 kb on + strand, within EX28DRAFT_2838
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 138,768 + EX28DRAFT_2835 0.52 +0.2 138,768 + EX28DRAFT_2835 0.52 +1.5 138,768 + EX28DRAFT_2835 0.52 -0.2 138,769 - EX28DRAFT_2835 0.52 +0.1 138,769 - EX28DRAFT_2835 0.52 +0.1 138,769 - EX28DRAFT_2835 0.52 +0.2 138,769 - EX28DRAFT_2835 0.52 -0.3 138,770 + EX28DRAFT_2835 0.53 +0.1 138,770 + EX28DRAFT_2835 0.53 +0.0 138,819 + EX28DRAFT_2835 0.57 -0.3 138,820 - EX28DRAFT_2835 0.57 +0.5 138,820 - EX28DRAFT_2835 0.57 -0.0 138,924 - EX28DRAFT_2835 0.65 +0.0 139,034 + EX28DRAFT_2835 0.74 -1.0 139,039 + EX28DRAFT_2835 0.75 -0.4 139,142 + EX28DRAFT_2835 0.83 +0.4 139,244 + +1.2 139,282 - -0.2 139,295 + -0.7 139,301 + +0.2 139,301 + -0.3 139,301 + -0.9 139,481 + EX28DRAFT_2836 0.38 -0.3 139,554 + EX28DRAFT_2836 0.57 +0.0 139,555 - EX28DRAFT_2836 0.58 -0.5 139,706 - +0.2 140,102 + EX28DRAFT_2837 0.34 -0.7 140,102 + EX28DRAFT_2837 0.34 -1.0 140,103 - EX28DRAFT_2837 0.34 -1.7 140,126 + EX28DRAFT_2837 0.36 -2.6 140,126 + EX28DRAFT_2837 0.36 -1.4 140,199 - EX28DRAFT_2837 0.44 -2.2 140,286 - EX28DRAFT_2837 0.52 -0.5 140,286 - EX28DRAFT_2837 0.52 -2.7 140,286 - EX28DRAFT_2837 0.52 -1.1 140,385 + EX28DRAFT_2837 0.62 -1.6 140,385 + EX28DRAFT_2837 0.62 -0.4 140,386 - EX28DRAFT_2837 0.62 -1.4 140,527 + EX28DRAFT_2837 0.77 -0.9 140,579 - EX28DRAFT_2837 0.82 -1.3 140,579 - EX28DRAFT_2837 0.82 -0.1 140,598 + EX28DRAFT_2837 0.84 -0.6 140,667 + -1.0 140,668 - -1.9 140,671 - +0.3 140,727 + -0.6 140,760 - -0.2 140,760 - -0.3 140,890 + +0.3 140,939 - EX28DRAFT_2838 0.11 -2.4 140,983 - EX28DRAFT_2838 0.15 -0.1 140,995 - EX28DRAFT_2838 0.16 -0.4 141,005 - EX28DRAFT_2838 0.17 +0.1 141,017 - EX28DRAFT_2838 0.18 -0.8 141,019 + EX28DRAFT_2838 0.18 +0.6 141,020 - EX28DRAFT_2838 0.18 -0.2 141,121 + EX28DRAFT_2838 0.27 -1.2 141,208 + EX28DRAFT_2838 0.35 -2.2 141,209 - EX28DRAFT_2838 0.35 -0.4 141,209 - EX28DRAFT_2838 0.35 -0.7 141,283 + EX28DRAFT_2838 0.41 -0.9 141,287 - EX28DRAFT_2838 0.42 -0.4 141,305 - EX28DRAFT_2838 0.43 -0.7 141,337 + EX28DRAFT_2838 0.46 -1.3 141,386 - EX28DRAFT_2838 0.50 +0.1 141,440 - EX28DRAFT_2838 0.55 -0.6 141,561 + EX28DRAFT_2838 0.66 -0.2 141,561 + EX28DRAFT_2838 0.66 -0.6 141,562 - EX28DRAFT_2838 0.66 -0.0 141,590 - EX28DRAFT_2838 0.69 +0.2 141,591 + EX28DRAFT_2838 0.69 +0.6 141,591 + EX28DRAFT_2838 0.69 -0.3 141,591 + EX28DRAFT_2838 0.69 -1.7 141,592 - EX28DRAFT_2838 0.69 +0.0 141,609 + EX28DRAFT_2838 0.70 +0.3 141,645 + EX28DRAFT_2838 0.73 -0.4
Or see this region's nucleotide sequence