Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2774

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2771 and EX28DRAFT_2772 are separated by 54 nucleotidesEX28DRAFT_2772 and EX28DRAFT_2773 are separated by 72 nucleotidesEX28DRAFT_2773 and EX28DRAFT_2774 are separated by 8 nucleotidesEX28DRAFT_2774 and EX28DRAFT_2775 are separated by 83 nucleotidesEX28DRAFT_2775 and EX28DRAFT_2776 overlap by 4 nucleotides EX28DRAFT_2771: EX28DRAFT_2771 - AraC-type DNA-binding domain-containing proteins, at 80,405 to 81,169 _2771 EX28DRAFT_2772: EX28DRAFT_2772 - S-ribosylhomocysteine lyase (EC 4.4.1.21)/quorum-sensing autoinducer 2 (AI-2) synthesis protein LuxS, at 81,224 to 81,739 _2772 EX28DRAFT_2773: EX28DRAFT_2773 - RNA, at 81,812 to 81,887 _2773 EX28DRAFT_2774: EX28DRAFT_2774 - glutamate-cysteine ligase (EC 6.3.2.2), at 81,896 to 83,440 _2774 EX28DRAFT_2775: EX28DRAFT_2775 - Predicted membrane protein, at 83,524 to 83,952 _2775 EX28DRAFT_2776: EX28DRAFT_2776 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/beta-phosphoglucomutase family hydrolase, at 83,949 to 84,515 _2776 Position (kb) 81 82 83 84Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 81.225 kb on + strandat 81.225 kb on + strandat 81.226 kb on - strandat 81.226 kb on - strandat 81.226 kb on - strandat 81.348 kb on + strand, within EX28DRAFT_2772at 81.348 kb on + strand, within EX28DRAFT_2772at 81.349 kb on - strand, within EX28DRAFT_2772at 81.352 kb on + strand, within EX28DRAFT_2772at 81.363 kb on + strand, within EX28DRAFT_2772at 81.477 kb on + strand, within EX28DRAFT_2772at 81.477 kb on + strand, within EX28DRAFT_2772at 81.577 kb on + strand, within EX28DRAFT_2772at 81.578 kb on - strand, within EX28DRAFT_2772at 81.683 kb on + strand, within EX28DRAFT_2772at 81.725 kb on - strandat 81.728 kb on + strandat 81.728 kb on + strandat 81.728 kb on + strandat 81.728 kb on + strandat 81.728 kb on + strandat 81.732 kb on - strandat 81.739 kb on + strandat 81.740 kb on - strandat 81.774 kb on + strandat 81.789 kb on + strandat 81.790 kb on - strandat 81.808 kb on + strandat 81.809 kb on - strandat 81.857 kb on - strand, within EX28DRAFT_2773at 81.857 kb on - strand, within EX28DRAFT_2773at 81.859 kb on - strand, within EX28DRAFT_2773at 81.898 kb on - strandat 82.090 kb on + strand, within EX28DRAFT_2774at 82.298 kb on - strand, within EX28DRAFT_2774at 82.467 kb on - strand, within EX28DRAFT_2774at 82.476 kb on + strand, within EX28DRAFT_2774at 82.677 kb on + strand, within EX28DRAFT_2774at 82.700 kb on - strand, within EX28DRAFT_2774at 82.724 kb on - strand, within EX28DRAFT_2774at 82.777 kb on - strand, within EX28DRAFT_2774at 82.914 kb on + strand, within EX28DRAFT_2774at 82.915 kb on - strand, within EX28DRAFT_2774at 82.989 kb on + strand, within EX28DRAFT_2774at 83.121 kb on + strand, within EX28DRAFT_2774at 83.121 kb on + strand, within EX28DRAFT_2774at 83.147 kb on - strand, within EX28DRAFT_2774at 83.206 kb on + strand, within EX28DRAFT_2774at 83.216 kb on - strand, within EX28DRAFT_2774at 83.279 kb on - strand, within EX28DRAFT_2774at 83.329 kb on + strandat 83.426 kb on + strandat 83.463 kb on + strandat 83.464 kb on - strandat 83.464 kb on - strandat 83.469 kb on + strandat 83.470 kb on - strandat 83.479 kb on - strandat 83.525 kb on + strandat 83.525 kb on + strandat 83.541 kb on + strandat 83.541 kb on + strandat 83.542 kb on - strandat 83.549 kb on - strandat 83.549 kb on - strandat 83.653 kb on + strand, within EX28DRAFT_2775at 83.654 kb on - strand, within EX28DRAFT_2775at 83.665 kb on + strand, within EX28DRAFT_2775at 83.665 kb on + strand, within EX28DRAFT_2775at 83.665 kb on + strand, within EX28DRAFT_2775at 83.666 kb on - strand, within EX28DRAFT_2775at 83.681 kb on - strand, within EX28DRAFT_2775at 83.683 kb on + strand, within EX28DRAFT_2775at 83.776 kb on - strand, within EX28DRAFT_2775at 83.802 kb on + strand, within EX28DRAFT_2775at 83.815 kb on + strand, within EX28DRAFT_2775at 83.818 kb on + strand, within EX28DRAFT_2775at 83.821 kb on + strand, within EX28DRAFT_2775at 83.822 kb on - strand, within EX28DRAFT_2775at 83.822 kb on - strand, within EX28DRAFT_2775at 83.822 kb on - strand, within EX28DRAFT_2775at 84.228 kb on + strand, within EX28DRAFT_2776at 84.229 kb on - strand, within EX28DRAFT_2776at 84.229 kb on - strand, within EX28DRAFT_2776at 84.233 kb on + strand, within EX28DRAFT_2776

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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81,225 + -0.6
81,225 + +0.1
81,226 - -0.2
81,226 - +0.2
81,226 - -0.0
81,348 + EX28DRAFT_2772 0.24 -1.6
81,348 + EX28DRAFT_2772 0.24 +0.1
81,349 - EX28DRAFT_2772 0.24 +0.4
81,352 + EX28DRAFT_2772 0.25 +0.1
81,363 + EX28DRAFT_2772 0.27 -0.6
81,477 + EX28DRAFT_2772 0.49 -0.6
81,477 + EX28DRAFT_2772 0.49 +2.0
81,577 + EX28DRAFT_2772 0.68 +0.6
81,578 - EX28DRAFT_2772 0.69 +0.1
81,683 + EX28DRAFT_2772 0.89 -1.7
81,725 - +0.2
81,728 + +0.8
81,728 + +0.7
81,728 + -0.2
81,728 + +0.4
81,728 + +0.5
81,732 - -0.5
81,739 + -0.5
81,740 - +0.1
81,774 + +1.8
81,789 + -2.4
81,790 - +0.2
81,808 + -2.3
81,809 - -0.4
81,857 - EX28DRAFT_2773 0.59 +0.1
81,857 - EX28DRAFT_2773 0.59 +0.0
81,859 - EX28DRAFT_2773 0.62 -0.1
81,898 - -0.1
82,090 + EX28DRAFT_2774 0.13 -1.1
82,298 - EX28DRAFT_2774 0.26 -2.0
82,467 - EX28DRAFT_2774 0.37 -2.3
82,476 + EX28DRAFT_2774 0.38 -3.2
82,677 + EX28DRAFT_2774 0.51 -3.8
82,700 - EX28DRAFT_2774 0.52 -2.4
82,724 - EX28DRAFT_2774 0.54 -4.9
82,777 - EX28DRAFT_2774 0.57 -2.3
82,914 + EX28DRAFT_2774 0.66 -4.2
82,915 - EX28DRAFT_2774 0.66 -1.0
82,989 + EX28DRAFT_2774 0.71 -4.4
83,121 + EX28DRAFT_2774 0.79 -3.0
83,121 + EX28DRAFT_2774 0.79 -1.4
83,147 - EX28DRAFT_2774 0.81 -3.9
83,206 + EX28DRAFT_2774 0.85 -2.0
83,216 - EX28DRAFT_2774 0.85 -0.4
83,279 - EX28DRAFT_2774 0.90 -2.4
83,329 + -4.8
83,426 + -2.7
83,463 + -3.6
83,464 - -0.4
83,464 - -2.0
83,469 + -3.3
83,470 - -1.2
83,479 - -0.9
83,525 + -3.6
83,525 + -3.9
83,541 + -3.0
83,541 + -2.6
83,542 - -0.4
83,549 - -0.4
83,549 - -0.2
83,653 + EX28DRAFT_2775 0.30 -2.2
83,654 - EX28DRAFT_2775 0.30 -0.1
83,665 + EX28DRAFT_2775 0.33 -0.9
83,665 + EX28DRAFT_2775 0.33 -5.0
83,665 + EX28DRAFT_2775 0.33 -2.9
83,666 - EX28DRAFT_2775 0.33 -0.5
83,681 - EX28DRAFT_2775 0.37 -0.1
83,683 + EX28DRAFT_2775 0.37 -1.9
83,776 - EX28DRAFT_2775 0.59 -0.5
83,802 + EX28DRAFT_2775 0.65 -1.5
83,815 + EX28DRAFT_2775 0.68 -0.2
83,818 + EX28DRAFT_2775 0.69 +0.1
83,821 + EX28DRAFT_2775 0.69 +0.2
83,822 - EX28DRAFT_2775 0.69 +0.3
83,822 - EX28DRAFT_2775 0.69 +0.1
83,822 - EX28DRAFT_2775 0.69 +0.3
84,228 + EX28DRAFT_2776 0.49 -0.0
84,229 - EX28DRAFT_2776 0.49 +0.3
84,229 - EX28DRAFT_2776 0.49 +1.3
84,233 + EX28DRAFT_2776 0.50 -0.3

Or see this region's nucleotide sequence