Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2750 and EX28DRAFT_2751 overlap by 4 nucleotides EX28DRAFT_2751 and EX28DRAFT_2752 are separated by 179 nucleotides EX28DRAFT_2752 and EX28DRAFT_2753 are separated by 9 nucleotides EX28DRAFT_2753 and EX28DRAFT_2754 are separated by 79 nucleotides EX28DRAFT_2754 and EX28DRAFT_2755 are separated by 37 nucleotides
EX28DRAFT_2750: EX28DRAFT_2750 - Transcriptional regulator, at 61,315 to 62,244
_2750
EX28DRAFT_2751: EX28DRAFT_2751 - Uncharacterized homolog of Blt101, at 62,241 to 62,399
_2751
EX28DRAFT_2752: EX28DRAFT_2752 - Predicted transcriptional regulators, at 62,579 to 62,878
_2752
EX28DRAFT_2753: EX28DRAFT_2753 - Rhodanese-related sulfurtransferase, at 62,888 to 63,409
_2753
EX28DRAFT_2754: EX28DRAFT_2754 - hypothetical protein, at 63,489 to 63,668
_2754
EX28DRAFT_2755: EX28DRAFT_2755 - DNA-binding protein H-NS, at 63,706 to 64,110
_2755
Position (kb) 62
63
64 Strain fitness (log2 ratio) -2
-1
0
1
2 at 62.053 kb on + strand, within EX28DRAFT_2750 at 62.054 kb on - strand, within EX28DRAFT_2750 at 62.054 kb on - strand, within EX28DRAFT_2750 at 62.054 kb on - strand, within EX28DRAFT_2750 at 62.218 kb on + strand at 62.218 kb on + strand at 62.218 kb on + strand at 62.218 kb on + strand at 62.218 kb on + strand at 62.219 kb on - strand at 62.219 kb on - strand at 62.219 kb on - strand at 62.219 kb on - strand at 62.219 kb on - strand at 62.219 kb on - strand at 62.219 kb on - strand at 62.219 kb on - strand at 62.219 kb on - strand at 62.220 kb on + strand at 62.228 kb on + strand at 62.229 kb on - strand at 62.287 kb on + strand, within EX28DRAFT_2751 at 62.315 kb on + strand, within EX28DRAFT_2751 at 62.316 kb on - strand, within EX28DRAFT_2751 at 62.319 kb on - strand, within EX28DRAFT_2751 at 62.402 kb on - strand at 62.434 kb on - strand at 62.450 kb on + strand at 62.508 kb on - strand at 62.527 kb on - strand at 62.576 kb on - strand at 62.728 kb on - strand, within EX28DRAFT_2752 at 62.814 kb on - strand, within EX28DRAFT_2752 at 62.835 kb on + strand, within EX28DRAFT_2752 at 62.868 kb on - strand at 63.037 kb on + strand, within EX28DRAFT_2753 at 63.278 kb on + strand, within EX28DRAFT_2753 at 63.414 kb on + strand at 63.426 kb on + strand at 63.485 kb on + strand at 63.486 kb on - strand at 63.486 kb on - strand at 63.486 kb on - strand at 63.488 kb on + strand at 63.507 kb on + strand, within EX28DRAFT_2754 at 63.508 kb on - strand, within EX28DRAFT_2754 at 63.508 kb on - strand, within EX28DRAFT_2754 at 63.553 kb on + strand, within EX28DRAFT_2754 at 63.553 kb on + strand, within EX28DRAFT_2754 at 63.554 kb on - strand, within EX28DRAFT_2754 at 63.606 kb on + strand, within EX28DRAFT_2754 at 63.606 kb on + strand, within EX28DRAFT_2754 at 63.606 kb on + strand, within EX28DRAFT_2754 at 63.607 kb on - strand, within EX28DRAFT_2754 at 63.608 kb on + strand, within EX28DRAFT_2754 at 63.628 kb on + strand, within EX28DRAFT_2754 at 63.822 kb on - strand, within EX28DRAFT_2755 at 63.971 kb on - strand, within EX28DRAFT_2755 at 64.048 kb on + strand, within EX28DRAFT_2755 at 64.084 kb on - strand at 64.087 kb on - strand at 64.114 kb on - strand at 64.114 kb on - strand at 64.144 kb on - strand at 64.147 kb on + strand at 64.148 kb on - strand at 64.182 kb on + strand at 64.214 kb on + strand at 64.215 kb on - strand at 64.218 kb on + strand at 64.221 kb on - strand at 64.294 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 62,053 + EX28DRAFT_2750 0.79 +0.6 62,054 - EX28DRAFT_2750 0.79 +0.6 62,054 - EX28DRAFT_2750 0.79 -0.5 62,054 - EX28DRAFT_2750 0.79 -0.4 62,218 + -0.2 62,218 + -2.2 62,218 + -0.0 62,218 + -1.3 62,218 + -0.6 62,219 - -0.8 62,219 - -0.9 62,219 - -0.2 62,219 - +0.1 62,219 - -0.8 62,219 - +0.8 62,219 - +0.4 62,219 - -0.1 62,219 - -2.0 62,220 + +0.0 62,228 + +2.0 62,229 - -2.2 62,287 + EX28DRAFT_2751 0.29 -0.0 62,315 + EX28DRAFT_2751 0.47 -0.1 62,316 - EX28DRAFT_2751 0.47 -0.3 62,319 - EX28DRAFT_2751 0.49 +0.3 62,402 - +0.2 62,434 - +0.6 62,450 + -0.0 62,508 - +1.2 62,527 - +1.8 62,576 - +0.3 62,728 - EX28DRAFT_2752 0.50 +0.2 62,814 - EX28DRAFT_2752 0.78 -0.4 62,835 + EX28DRAFT_2752 0.85 +1.3 62,868 - -0.1 63,037 + EX28DRAFT_2753 0.29 -1.7 63,278 + EX28DRAFT_2753 0.75 -0.7 63,414 + -0.5 63,426 + +0.2 63,485 + +0.1 63,486 - +0.1 63,486 - +0.3 63,486 - -0.5 63,488 + -1.0 63,507 + EX28DRAFT_2754 0.10 +0.1 63,508 - EX28DRAFT_2754 0.11 +0.0 63,508 - EX28DRAFT_2754 0.11 -0.6 63,553 + EX28DRAFT_2754 0.36 +0.1 63,553 + EX28DRAFT_2754 0.36 -0.5 63,554 - EX28DRAFT_2754 0.36 -0.9 63,606 + EX28DRAFT_2754 0.65 +0.0 63,606 + EX28DRAFT_2754 0.65 -0.2 63,606 + EX28DRAFT_2754 0.65 +0.5 63,607 - EX28DRAFT_2754 0.66 +1.1 63,608 + EX28DRAFT_2754 0.66 +0.3 63,628 + EX28DRAFT_2754 0.77 -0.4 63,822 - EX28DRAFT_2755 0.29 +0.8 63,971 - EX28DRAFT_2755 0.65 -0.6 64,048 + EX28DRAFT_2755 0.84 -0.6 64,084 - +1.0 64,087 - -0.3 64,114 - -0.4 64,114 - -1.4 64,144 - +0.3 64,147 + -2.1 64,148 - -0.2 64,182 + +0.1 64,214 + +2.1 64,215 - +0.8 64,218 + -0.2 64,221 - +1.0 64,294 - +0.2
Or see this region's nucleotide sequence