Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2730

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2728 and EX28DRAFT_2729 overlap by 4 nucleotidesEX28DRAFT_2729 and EX28DRAFT_2730 overlap by 41 nucleotidesEX28DRAFT_2730 and EX28DRAFT_2731 are separated by 759 nucleotides EX28DRAFT_2728: EX28DRAFT_2728 - hypothetical protein, at 29,230 to 30,021 _2728 EX28DRAFT_2729: EX28DRAFT_2729 - RNA polymerase sigma factor, sigma-70 family, at 30,018 to 30,596 _2729 EX28DRAFT_2730: EX28DRAFT_2730 - TPR repeat, at 30,556 to 31,083 _2730 EX28DRAFT_2731: EX28DRAFT_2731 - VCBS repeat/type I secretion C-terminal target domain (VC_A0849 subclass), at 31,843 to 42,810 _2731 Position (kb) 30 31 32Strain fitness (log2 ratio) -1 0 1at 29.616 kb on - strand, within EX28DRAFT_2728at 29.616 kb on - strand, within EX28DRAFT_2728at 29.625 kb on + strand, within EX28DRAFT_2728at 29.625 kb on + strand, within EX28DRAFT_2728at 29.625 kb on + strand, within EX28DRAFT_2728at 29.626 kb on - strand, within EX28DRAFT_2728at 29.626 kb on - strand, within EX28DRAFT_2728at 29.626 kb on - strand, within EX28DRAFT_2728at 29.626 kb on - strand, within EX28DRAFT_2728at 29.626 kb on - strand, within EX28DRAFT_2728at 29.627 kb on + strand, within EX28DRAFT_2728at 29.627 kb on + strand, within EX28DRAFT_2728at 29.627 kb on + strand, within EX28DRAFT_2728at 29.628 kb on - strand, within EX28DRAFT_2728at 29.628 kb on - strand, within EX28DRAFT_2728at 29.628 kb on - strand, within EX28DRAFT_2728at 29.628 kb on - strand, within EX28DRAFT_2728at 29.659 kb on - strand, within EX28DRAFT_2728at 29.659 kb on - strand, within EX28DRAFT_2728at 29.659 kb on - strand, within EX28DRAFT_2728at 29.694 kb on - strand, within EX28DRAFT_2728at 29.966 kb on - strandat 29.966 kb on - strandat 29.966 kb on - strandat 30.224 kb on + strand, within EX28DRAFT_2729at 30.224 kb on + strand, within EX28DRAFT_2729at 30.224 kb on + strand, within EX28DRAFT_2729at 30.225 kb on - strand, within EX28DRAFT_2729at 30.225 kb on - strand, within EX28DRAFT_2729at 30.225 kb on - strand, within EX28DRAFT_2729at 30.225 kb on - strand, within EX28DRAFT_2729at 30.225 kb on - strand, within EX28DRAFT_2729at 30.225 kb on - strand, within EX28DRAFT_2729at 30.225 kb on - strand, within EX28DRAFT_2729at 30.226 kb on + strand, within EX28DRAFT_2729at 30.226 kb on + strand, within EX28DRAFT_2729at 30.226 kb on + strand, within EX28DRAFT_2729at 30.227 kb on - strand, within EX28DRAFT_2729at 30.227 kb on - strand, within EX28DRAFT_2729at 30.338 kb on + strand, within EX28DRAFT_2729at 30.884 kb on + strand, within EX28DRAFT_2730at 30.885 kb on - strand, within EX28DRAFT_2730at 30.885 kb on - strand, within EX28DRAFT_2730at 30.890 kb on + strand, within EX28DRAFT_2730at 30.890 kb on + strand, within EX28DRAFT_2730at 30.890 kb on + strand, within EX28DRAFT_2730at 30.891 kb on - strand, within EX28DRAFT_2730at 30.891 kb on - strand, within EX28DRAFT_2730at 30.959 kb on + strand, within EX28DRAFT_2730at 30.959 kb on + strand, within EX28DRAFT_2730at 30.959 kb on + strand, within EX28DRAFT_2730at 30.960 kb on - strand, within EX28DRAFT_2730at 31.002 kb on + strand, within EX28DRAFT_2730at 31.002 kb on + strand, within EX28DRAFT_2730at 31.002 kb on + strand, within EX28DRAFT_2730at 31.002 kb on + strand, within EX28DRAFT_2730at 31.003 kb on - strand, within EX28DRAFT_2730at 31.006 kb on - strand, within EX28DRAFT_2730at 31.078 kb on - strandat 31.078 kb on - strandat 31.083 kb on + strandat 31.084 kb on - strandat 31.084 kb on - strandat 31.084 kb on - strandat 31.085 kb on + strandat 31.085 kb on + strandat 31.085 kb on + strandat 31.086 kb on - strandat 31.086 kb on - strandat 31.118 kb on + strandat 31.140 kb on + strandat 31.374 kb on + strandat 31.380 kb on - strandat 31.380 kb on - strandat 31.398 kb on - strandat 31.405 kb on - strandat 31.410 kb on - strandat 31.580 kb on - strandat 31.588 kb on + strandat 31.649 kb on - strandat 31.663 kb on + strandat 31.665 kb on + strandat 31.666 kb on - strandat 31.666 kb on - strandat 31.673 kb on + strandat 31.779 kb on - strandat 31.819 kb on + strandat 31.819 kb on + strandat 31.819 kb on + strandat 31.820 kb on - strandat 31.840 kb on + strandat 31.860 kb on + strandat 31.860 kb on + strandat 31.863 kb on - strandat 31.927 kb on - strandat 31.995 kb on + strandat 32.035 kb on + strandat 32.036 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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29,616 - EX28DRAFT_2728 0.49 +0.2
29,616 - EX28DRAFT_2728 0.49 +0.5
29,625 + EX28DRAFT_2728 0.50 -1.0
29,625 + EX28DRAFT_2728 0.50 +0.5
29,625 + EX28DRAFT_2728 0.50 +0.8
29,626 - EX28DRAFT_2728 0.50 -0.5
29,626 - EX28DRAFT_2728 0.50 -0.2
29,626 - EX28DRAFT_2728 0.50 -0.3
29,626 - EX28DRAFT_2728 0.50 -0.4
29,626 - EX28DRAFT_2728 0.50 -0.6
29,627 + EX28DRAFT_2728 0.50 -0.5
29,627 + EX28DRAFT_2728 0.50 -0.6
29,627 + EX28DRAFT_2728 0.50 -0.7
29,628 - EX28DRAFT_2728 0.50 +0.5
29,628 - EX28DRAFT_2728 0.50 +0.5
29,628 - EX28DRAFT_2728 0.50 -0.2
29,628 - EX28DRAFT_2728 0.50 -0.3
29,659 - EX28DRAFT_2728 0.54 +0.1
29,659 - EX28DRAFT_2728 0.54 +0.2
29,659 - EX28DRAFT_2728 0.54 -0.0
29,694 - EX28DRAFT_2728 0.59 -0.3
29,966 - +0.0
29,966 - -0.2
29,966 - -0.4
30,224 + EX28DRAFT_2729 0.36 +0.3
30,224 + EX28DRAFT_2729 0.36 -0.3
30,224 + EX28DRAFT_2729 0.36 +0.2
30,225 - EX28DRAFT_2729 0.36 -0.5
30,225 - EX28DRAFT_2729 0.36 -1.1
30,225 - EX28DRAFT_2729 0.36 -0.4
30,225 - EX28DRAFT_2729 0.36 +0.6
30,225 - EX28DRAFT_2729 0.36 +0.2
30,225 - EX28DRAFT_2729 0.36 +0.6
30,225 - EX28DRAFT_2729 0.36 -0.9
30,226 + EX28DRAFT_2729 0.36 +0.3
30,226 + EX28DRAFT_2729 0.36 -0.0
30,226 + EX28DRAFT_2729 0.36 +0.8
30,227 - EX28DRAFT_2729 0.36 +0.8
30,227 - EX28DRAFT_2729 0.36 -0.0
30,338 + EX28DRAFT_2729 0.55 -0.5
30,884 + EX28DRAFT_2730 0.62 -0.6
30,885 - EX28DRAFT_2730 0.62 -0.8
30,885 - EX28DRAFT_2730 0.62 +0.2
30,890 + EX28DRAFT_2730 0.63 -1.0
30,890 + EX28DRAFT_2730 0.63 -0.4
30,890 + EX28DRAFT_2730 0.63 +0.1
30,891 - EX28DRAFT_2730 0.63 -0.4
30,891 - EX28DRAFT_2730 0.63 -0.3
30,959 + EX28DRAFT_2730 0.76 +0.3
30,959 + EX28DRAFT_2730 0.76 +0.5
30,959 + EX28DRAFT_2730 0.76 +0.8
30,960 - EX28DRAFT_2730 0.77 +0.6
31,002 + EX28DRAFT_2730 0.84 +0.2
31,002 + EX28DRAFT_2730 0.84 -1.0
31,002 + EX28DRAFT_2730 0.84 -0.3
31,002 + EX28DRAFT_2730 0.84 -0.6
31,003 - EX28DRAFT_2730 0.85 -0.0
31,006 - EX28DRAFT_2730 0.85 -0.3
31,078 - -0.4
31,078 - +0.6
31,083 + -0.0
31,084 - -0.0
31,084 - +0.7
31,084 - +0.7
31,085 + -0.3
31,085 + +0.1
31,085 + +0.1
31,086 - +0.2
31,086 - -0.3
31,118 + -0.0
31,140 + -0.1
31,374 + +0.4
31,380 - +0.4
31,380 - +0.5
31,398 - -1.4
31,405 - -0.1
31,410 - -0.1
31,580 - -0.5
31,588 + +0.4
31,649 - +0.7
31,663 + +0.5
31,665 + +0.1
31,666 - +0.8
31,666 - -0.3
31,673 + +0.2
31,779 - -0.1
31,819 + -0.1
31,819 + +0.2
31,819 + -0.3
31,820 - +0.2
31,840 + +0.4
31,860 + -0.4
31,860 + +0.3
31,863 - +0.1
31,927 - +0.2
31,995 + +0.3
32,035 + +0.5
32,036 - -0.0

Or see this region's nucleotide sequence