Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2724

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2722 and EX28DRAFT_2723 are separated by 156 nucleotidesEX28DRAFT_2723 and EX28DRAFT_2724 are separated by 89 nucleotidesEX28DRAFT_2724 and EX28DRAFT_2725 are separated by 416 nucleotidesEX28DRAFT_2725 and EX28DRAFT_2726 are separated by 87 nucleotides EX28DRAFT_2722: EX28DRAFT_2722 - Oligoketide cyclase/lipid transport protein, at 25,878 to 26,315 _2722 EX28DRAFT_2723: EX28DRAFT_2723 - SsrA-binding protein, at 26,472 to 26,954 _2723 EX28DRAFT_2724: EX28DRAFT_2724 - RNA, at 27,044 to 27,407 _2724 EX28DRAFT_2725: EX28DRAFT_2725 - hypothetical protein, at 27,824 to 28,180 _2725 EX28DRAFT_2726: EX28DRAFT_2726 - Cupin domain, at 28,268 to 28,612 _2726 Position (kb) 27 28Strain fitness (log2 ratio) -2 -1 0 1at 26.350 kb on - strandat 26.356 kb on + strandat 26.356 kb on + strandat 26.357 kb on - strandat 26.394 kb on + strandat 26.399 kb on + strandat 26.472 kb on - strandat 26.634 kb on + strand, within EX28DRAFT_2723at 26.634 kb on + strand, within EX28DRAFT_2723at 26.710 kb on - strand, within EX28DRAFT_2723at 27.025 kb on + strandat 27.025 kb on + strandat 27.026 kb on - strandat 27.164 kb on + strand, within EX28DRAFT_2724at 27.344 kb on + strand, within EX28DRAFT_2724at 27.344 kb on + strand, within EX28DRAFT_2724at 27.618 kb on + strandat 27.618 kb on + strandat 27.619 kb on - strandat 27.619 kb on - strandat 27.638 kb on + strandat 27.638 kb on + strandat 27.638 kb on + strandat 27.639 kb on - strandat 27.639 kb on - strandat 27.729 kb on + strandat 27.810 kb on + strandat 27.811 kb on - strandat 27.821 kb on - strandat 27.823 kb on + strandat 27.824 kb on - strandat 27.838 kb on + strandat 27.839 kb on - strandat 27.846 kb on + strandat 27.847 kb on - strandat 28.012 kb on + strand, within EX28DRAFT_2725at 28.178 kb on + strandat 28.243 kb on - strandat 28.243 kb on - strandat 28.243 kb on - strandat 28.317 kb on + strand, within EX28DRAFT_2726at 28.317 kb on + strand, within EX28DRAFT_2726at 28.318 kb on - strand, within EX28DRAFT_2726

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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26,350 - -0.4
26,356 + -0.4
26,356 + -0.5
26,357 - -0.2
26,394 + -0.2
26,399 + -1.2
26,472 - -0.9
26,634 + EX28DRAFT_2723 0.34 +0.1
26,634 + EX28DRAFT_2723 0.34 -1.8
26,710 - EX28DRAFT_2723 0.49 -2.7
27,025 + -0.4
27,025 + -0.3
27,026 - -0.7
27,164 + EX28DRAFT_2724 0.33 -1.0
27,344 + EX28DRAFT_2724 0.82 -0.9
27,344 + EX28DRAFT_2724 0.82 -0.0
27,618 + +0.0
27,618 + -0.1
27,619 - -0.6
27,619 - +0.4
27,638 + -0.4
27,638 + -0.6
27,638 + -0.5
27,639 - -0.5
27,639 - +0.4
27,729 + +0.8
27,810 + +0.5
27,811 - -0.4
27,821 - +0.4
27,823 + -0.6
27,824 - +0.2
27,838 + +1.0
27,839 - +0.9
27,846 + +0.3
27,847 - -0.6
28,012 + EX28DRAFT_2725 0.53 -0.1
28,178 + -0.9
28,243 - -0.2
28,243 - +0.7
28,243 - -0.4
28,317 + EX28DRAFT_2726 0.14 +0.3
28,317 + EX28DRAFT_2726 0.14 -0.4
28,318 - EX28DRAFT_2726 0.14 -0.1

Or see this region's nucleotide sequence