Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2673 and EX28DRAFT_2674 are separated by 2 nucleotides EX28DRAFT_2674 and EX28DRAFT_2675 overlap by 4 nucleotides
EX28DRAFT_2673: EX28DRAFT_2673 - ABC-type dipeptide transport system, periplasmic component, at 2,711,667 to 2,713,181
_2673
EX28DRAFT_2674: EX28DRAFT_2674 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 2,713,184 to 2,714,266
_2674
EX28DRAFT_2675: EX28DRAFT_2675 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 2,714,263 to 2,715,276
_2675
Position (kb)
2713
2714
2715 Strain fitness (log2 ratio)
-1
0
1 at 2712.256 kb on + strand, within EX28DRAFT_2673 at 2712.257 kb on - strand, within EX28DRAFT_2673 at 2712.257 kb on - strand, within EX28DRAFT_2673 at 2712.257 kb on - strand, within EX28DRAFT_2673 at 2712.257 kb on - strand, within EX28DRAFT_2673 at 2712.535 kb on + strand, within EX28DRAFT_2673 at 2712.535 kb on + strand, within EX28DRAFT_2673 at 2712.536 kb on - strand, within EX28DRAFT_2673 at 2713.037 kb on - strand at 2713.037 kb on - strand at 2713.039 kb on + strand at 2713.039 kb on + strand at 2713.039 kb on + strand at 2713.040 kb on - strand at 2713.040 kb on - strand at 2713.040 kb on - strand at 2713.040 kb on - strand at 2713.040 kb on - strand at 2713.040 kb on - strand at 2713.040 kb on - strand at 2713.040 kb on - strand at 2713.040 kb on - strand at 2713.040 kb on - strand at 2713.139 kb on + strand at 2713.140 kb on - strand at 2713.140 kb on - strand at 2713.140 kb on - strand at 2713.140 kb on - strand at 2713.170 kb on - strand at 2713.170 kb on - strand at 2713.170 kb on - strand at 2713.182 kb on + strand at 2713.182 kb on + strand at 2713.279 kb on + strand at 2713.518 kb on + strand, within EX28DRAFT_2674 at 2713.519 kb on - strand, within EX28DRAFT_2674 at 2713.581 kb on + strand, within EX28DRAFT_2674 at 2713.581 kb on + strand, within EX28DRAFT_2674 at 2713.581 kb on + strand, within EX28DRAFT_2674 at 2713.581 kb on + strand, within EX28DRAFT_2674 at 2714.102 kb on - strand, within EX28DRAFT_2674 at 2714.102 kb on - strand, within EX28DRAFT_2674 at 2714.510 kb on + strand, within EX28DRAFT_2675 at 2714.573 kb on + strand, within EX28DRAFT_2675 at 2714.573 kb on + strand, within EX28DRAFT_2675 at 2714.574 kb on - strand, within EX28DRAFT_2675 at 2714.614 kb on + strand, within EX28DRAFT_2675 at 2714.614 kb on + strand, within EX28DRAFT_2675 at 2714.614 kb on + strand, within EX28DRAFT_2675 at 2715.008 kb on + strand, within EX28DRAFT_2675 at 2715.181 kb on - strand at 2715.259 kb on - strand at 2715.265 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,712,256 + EX28DRAFT_2673 0.39 -0.1 2,712,257 - EX28DRAFT_2673 0.39 +0.0 2,712,257 - EX28DRAFT_2673 0.39 -0.7 2,712,257 - EX28DRAFT_2673 0.39 -0.3 2,712,257 - EX28DRAFT_2673 0.39 -0.1 2,712,535 + EX28DRAFT_2673 0.57 -0.2 2,712,535 + EX28DRAFT_2673 0.57 -0.9 2,712,536 - EX28DRAFT_2673 0.57 +0.0 2,713,037 - +0.3 2,713,037 - +0.2 2,713,039 + -0.3 2,713,039 + +0.2 2,713,039 + -0.3 2,713,040 - +0.2 2,713,040 - -0.2 2,713,040 - -0.3 2,713,040 - -0.2 2,713,040 - -0.2 2,713,040 - +0.6 2,713,040 - +0.2 2,713,040 - +0.7 2,713,040 - +0.7 2,713,040 - +0.5 2,713,139 + -0.2 2,713,140 - +0.1 2,713,140 - +0.1 2,713,140 - -0.1 2,713,140 - +0.3 2,713,170 - -0.1 2,713,170 - +0.4 2,713,170 - -1.0 2,713,182 + -0.1 2,713,182 + -0.0 2,713,279 + -0.7 2,713,518 + EX28DRAFT_2674 0.31 +0.7 2,713,519 - EX28DRAFT_2674 0.31 +1.0 2,713,581 + EX28DRAFT_2674 0.37 +0.2 2,713,581 + EX28DRAFT_2674 0.37 -0.2 2,713,581 + EX28DRAFT_2674 0.37 -0.3 2,713,581 + EX28DRAFT_2674 0.37 +0.3 2,714,102 - EX28DRAFT_2674 0.85 +1.7 2,714,102 - EX28DRAFT_2674 0.85 +0.3 2,714,510 + EX28DRAFT_2675 0.24 -0.7 2,714,573 + EX28DRAFT_2675 0.31 +0.0 2,714,573 + EX28DRAFT_2675 0.31 +0.7 2,714,574 - EX28DRAFT_2675 0.31 +1.3 2,714,614 + EX28DRAFT_2675 0.35 -0.0 2,714,614 + EX28DRAFT_2675 0.35 +0.2 2,714,614 + EX28DRAFT_2675 0.35 +0.2 2,715,008 + EX28DRAFT_2675 0.73 +0.1 2,715,181 - +0.2 2,715,259 - -0.7 2,715,265 + +0.3
Or see this region's nucleotide sequence