Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2670

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2668 and EX28DRAFT_2669 are separated by 108 nucleotidesEX28DRAFT_2669 and EX28DRAFT_2670 are separated by 51 nucleotidesEX28DRAFT_2670 and EX28DRAFT_2671 are separated by 9 nucleotidesEX28DRAFT_2671 and EX28DRAFT_2672 are separated by 2 nucleotides EX28DRAFT_2668: EX28DRAFT_2668 - Acyl-CoA dehydrogenases, at 2,704,843 to 2,707,287 _2668 EX28DRAFT_2669: EX28DRAFT_2669 - Predicted amidohydrolase, at 2,707,396 to 2,708,166 _2669 EX28DRAFT_2670: EX28DRAFT_2670 - Gamma-glutamyltransferase, at 2,708,218 to 2,709,819 _2670 EX28DRAFT_2671: EX28DRAFT_2671 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 2,709,829 to 2,710,704 _2671 EX28DRAFT_2672: EX28DRAFT_2672 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 2,710,707 to 2,711,648 _2672 Position (kb) 2708 2709 2710Strain fitness (log2 ratio) -1 0 1 2 3 4at 2707.301 kb on + strandat 2707.301 kb on + strandat 2707.348 kb on + strandat 2707.349 kb on - strandat 2707.359 kb on - strandat 2707.359 kb on - strandat 2707.359 kb on - strandat 2707.416 kb on + strandat 2707.753 kb on + strand, within EX28DRAFT_2669at 2707.753 kb on + strand, within EX28DRAFT_2669at 2707.876 kb on + strand, within EX28DRAFT_2669at 2707.876 kb on + strand, within EX28DRAFT_2669at 2707.876 kb on + strand, within EX28DRAFT_2669at 2707.877 kb on - strand, within EX28DRAFT_2669at 2707.928 kb on + strand, within EX28DRAFT_2669at 2707.954 kb on + strand, within EX28DRAFT_2669at 2707.954 kb on + strand, within EX28DRAFT_2669at 2707.955 kb on - strand, within EX28DRAFT_2669at 2708.002 kb on + strand, within EX28DRAFT_2669at 2708.212 kb on - strandat 2708.315 kb on + strandat 2708.377 kb on - strandat 2708.475 kb on + strand, within EX28DRAFT_2670at 2708.476 kb on - strand, within EX28DRAFT_2670at 2708.628 kb on + strand, within EX28DRAFT_2670at 2708.628 kb on + strand, within EX28DRAFT_2670at 2708.711 kb on + strand, within EX28DRAFT_2670at 2708.711 kb on + strand, within EX28DRAFT_2670at 2708.711 kb on + strand, within EX28DRAFT_2670at 2708.711 kb on + strand, within EX28DRAFT_2670at 2708.711 kb on + strand, within EX28DRAFT_2670at 2708.711 kb on + strand, within EX28DRAFT_2670at 2708.712 kb on - strand, within EX28DRAFT_2670at 2708.712 kb on - strand, within EX28DRAFT_2670at 2708.712 kb on - strand, within EX28DRAFT_2670at 2708.712 kb on - strand, within EX28DRAFT_2670at 2708.712 kb on - strand, within EX28DRAFT_2670at 2708.712 kb on - strand, within EX28DRAFT_2670at 2708.712 kb on - strand, within EX28DRAFT_2670at 2708.712 kb on - strand, within EX28DRAFT_2670at 2708.712 kb on - strand, within EX28DRAFT_2670at 2708.765 kb on + strand, within EX28DRAFT_2670at 2708.814 kb on + strand, within EX28DRAFT_2670at 2708.850 kb on - strand, within EX28DRAFT_2670at 2708.886 kb on + strand, within EX28DRAFT_2670at 2708.906 kb on + strand, within EX28DRAFT_2670at 2708.992 kb on - strand, within EX28DRAFT_2670at 2709.098 kb on - strand, within EX28DRAFT_2670at 2709.874 kb on + strandat 2709.879 kb on + strandat 2710.104 kb on + strand, within EX28DRAFT_2671at 2710.104 kb on + strand, within EX28DRAFT_2671at 2710.104 kb on + strand, within EX28DRAFT_2671at 2710.104 kb on + strand, within EX28DRAFT_2671at 2710.105 kb on - strand, within EX28DRAFT_2671at 2710.105 kb on - strand, within EX28DRAFT_2671at 2710.105 kb on - strand, within EX28DRAFT_2671at 2710.105 kb on - strand, within EX28DRAFT_2671at 2710.105 kb on - strand, within EX28DRAFT_2671at 2710.154 kb on + strand, within EX28DRAFT_2671at 2710.154 kb on + strand, within EX28DRAFT_2671at 2710.154 kb on + strand, within EX28DRAFT_2671at 2710.155 kb on - strand, within EX28DRAFT_2671at 2710.155 kb on - strand, within EX28DRAFT_2671at 2710.411 kb on - strand, within EX28DRAFT_2671at 2710.411 kb on - strand, within EX28DRAFT_2671at 2710.411 kb on - strand, within EX28DRAFT_2671at 2710.447 kb on - strand, within EX28DRAFT_2671at 2710.493 kb on + strand, within EX28DRAFT_2671at 2710.494 kb on - strand, within EX28DRAFT_2671at 2710.494 kb on - strand, within EX28DRAFT_2671at 2710.738 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,707,301 + -0.5
2,707,301 + +0.3
2,707,348 + -1.6
2,707,349 - +0.2
2,707,359 - -0.9
2,707,359 - +0.2
2,707,359 - -0.3
2,707,416 + +0.4
2,707,753 + EX28DRAFT_2669 0.46 +0.6
2,707,753 + EX28DRAFT_2669 0.46 -0.9
2,707,876 + EX28DRAFT_2669 0.62 -0.5
2,707,876 + EX28DRAFT_2669 0.62 -1.7
2,707,876 + EX28DRAFT_2669 0.62 -0.6
2,707,877 - EX28DRAFT_2669 0.62 +0.5
2,707,928 + EX28DRAFT_2669 0.69 -1.3
2,707,954 + EX28DRAFT_2669 0.72 -0.2
2,707,954 + EX28DRAFT_2669 0.72 -0.5
2,707,955 - EX28DRAFT_2669 0.73 -0.3
2,708,002 + EX28DRAFT_2669 0.79 +0.6
2,708,212 - +0.3
2,708,315 + +0.7
2,708,377 - +0.2
2,708,475 + EX28DRAFT_2670 0.16 -0.2
2,708,476 - EX28DRAFT_2670 0.16 +0.4
2,708,628 + EX28DRAFT_2670 0.26 +0.8
2,708,628 + EX28DRAFT_2670 0.26 +3.8
2,708,711 + EX28DRAFT_2670 0.31 +0.4
2,708,711 + EX28DRAFT_2670 0.31 +0.2
2,708,711 + EX28DRAFT_2670 0.31 +0.2
2,708,711 + EX28DRAFT_2670 0.31 +0.6
2,708,711 + EX28DRAFT_2670 0.31 +1.5
2,708,711 + EX28DRAFT_2670 0.31 +0.1
2,708,712 - EX28DRAFT_2670 0.31 +0.4
2,708,712 - EX28DRAFT_2670 0.31 +0.3
2,708,712 - EX28DRAFT_2670 0.31 +0.0
2,708,712 - EX28DRAFT_2670 0.31 +0.1
2,708,712 - EX28DRAFT_2670 0.31 +0.1
2,708,712 - EX28DRAFT_2670 0.31 +1.2
2,708,712 - EX28DRAFT_2670 0.31 +0.9
2,708,712 - EX28DRAFT_2670 0.31 +0.1
2,708,712 - EX28DRAFT_2670 0.31 +0.5
2,708,765 + EX28DRAFT_2670 0.34 +0.2
2,708,814 + EX28DRAFT_2670 0.37 -0.3
2,708,850 - EX28DRAFT_2670 0.39 -0.2
2,708,886 + EX28DRAFT_2670 0.42 -0.1
2,708,906 + EX28DRAFT_2670 0.43 +1.4
2,708,992 - EX28DRAFT_2670 0.48 -0.1
2,709,098 - EX28DRAFT_2670 0.55 +0.1
2,709,874 + -1.4
2,709,879 + +0.6
2,710,104 + EX28DRAFT_2671 0.31 +0.5
2,710,104 + EX28DRAFT_2671 0.31 +0.9
2,710,104 + EX28DRAFT_2671 0.31 -0.7
2,710,104 + EX28DRAFT_2671 0.31 -0.2
2,710,105 - EX28DRAFT_2671 0.32 +0.2
2,710,105 - EX28DRAFT_2671 0.32 +0.3
2,710,105 - EX28DRAFT_2671 0.32 -0.6
2,710,105 - EX28DRAFT_2671 0.32 -0.5
2,710,105 - EX28DRAFT_2671 0.32 +0.2
2,710,154 + EX28DRAFT_2671 0.37 +0.1
2,710,154 + EX28DRAFT_2671 0.37 +0.1
2,710,154 + EX28DRAFT_2671 0.37 +0.2
2,710,155 - EX28DRAFT_2671 0.37 -0.3
2,710,155 - EX28DRAFT_2671 0.37 +0.3
2,710,411 - EX28DRAFT_2671 0.66 -0.4
2,710,411 - EX28DRAFT_2671 0.66 -0.2
2,710,411 - EX28DRAFT_2671 0.66 +0.3
2,710,447 - EX28DRAFT_2671 0.71 -1.3
2,710,493 + EX28DRAFT_2671 0.76 -0.7
2,710,494 - EX28DRAFT_2671 0.76 -0.1
2,710,494 - EX28DRAFT_2671 0.76 +0.1
2,710,738 + +0.2

Or see this region's nucleotide sequence