Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2663

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2661 and EX28DRAFT_2662 overlap by 8 nucleotidesEX28DRAFT_2662 and EX28DRAFT_2663 overlap by 8 nucleotidesEX28DRAFT_2663 and EX28DRAFT_2664 are separated by 3 nucleotides EX28DRAFT_2661: EX28DRAFT_2661 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit, at 2,698,199 to 2,698,837 _2661 EX28DRAFT_2662: EX28DRAFT_2662 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit, at 2,698,830 to 2,699,624 _2662 EX28DRAFT_2663: EX28DRAFT_2663 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit, at 2,699,617 to 2,700,852 _2663 EX28DRAFT_2664: EX28DRAFT_2664 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit, at 2,700,856 to 2,702,199 _2664 Position (kb) 2699 2700 2701Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2698.654 kb on + strand, within EX28DRAFT_2661at 2698.807 kb on + strandat 2698.857 kb on + strandat 2698.858 kb on - strandat 2699.107 kb on + strand, within EX28DRAFT_2662at 2699.108 kb on - strand, within EX28DRAFT_2662at 2699.110 kb on + strand, within EX28DRAFT_2662at 2699.111 kb on - strand, within EX28DRAFT_2662at 2699.161 kb on + strand, within EX28DRAFT_2662at 2699.161 kb on + strand, within EX28DRAFT_2662at 2699.161 kb on + strand, within EX28DRAFT_2662at 2699.188 kb on + strand, within EX28DRAFT_2662at 2699.188 kb on + strand, within EX28DRAFT_2662at 2699.189 kb on - strand, within EX28DRAFT_2662at 2699.193 kb on - strand, within EX28DRAFT_2662at 2699.214 kb on - strand, within EX28DRAFT_2662at 2699.240 kb on - strand, within EX28DRAFT_2662at 2699.402 kb on + strand, within EX28DRAFT_2662at 2699.549 kb on + strandat 2699.549 kb on + strandat 2699.549 kb on + strandat 2699.550 kb on - strandat 2699.778 kb on - strand, within EX28DRAFT_2663at 2699.787 kb on + strand, within EX28DRAFT_2663at 2699.788 kb on - strand, within EX28DRAFT_2663at 2699.799 kb on + strand, within EX28DRAFT_2663at 2700.028 kb on - strand, within EX28DRAFT_2663at 2700.366 kb on + strand, within EX28DRAFT_2663at 2700.367 kb on - strand, within EX28DRAFT_2663at 2700.403 kb on - strand, within EX28DRAFT_2663at 2700.448 kb on + strand, within EX28DRAFT_2663at 2700.448 kb on + strand, within EX28DRAFT_2663at 2700.449 kb on - strand, within EX28DRAFT_2663at 2700.449 kb on - strand, within EX28DRAFT_2663at 2700.449 kb on - strand, within EX28DRAFT_2663at 2700.459 kb on - strand, within EX28DRAFT_2663at 2700.596 kb on + strand, within EX28DRAFT_2663at 2700.597 kb on - strand, within EX28DRAFT_2663at 2700.597 kb on - strand, within EX28DRAFT_2663at 2700.597 kb on - strand, within EX28DRAFT_2663at 2700.597 kb on - strand, within EX28DRAFT_2663at 2700.597 kb on - strand, within EX28DRAFT_2663at 2700.638 kb on + strand, within EX28DRAFT_2663at 2700.639 kb on - strand, within EX28DRAFT_2663at 2700.639 kb on - strand, within EX28DRAFT_2663at 2700.776 kb on + strandat 2700.777 kb on - strandat 2700.777 kb on - strandat 2700.777 kb on - strandat 2700.778 kb on + strandat 2700.779 kb on - strandat 2700.912 kb on - strandat 2700.929 kb on + strandat 2700.929 kb on + strandat 2700.929 kb on + strandat 2700.929 kb on + strandat 2700.929 kb on + strandat 2700.930 kb on - strandat 2700.930 kb on - strandat 2700.930 kb on - strandat 2700.930 kb on - strandat 2700.934 kb on - strandat 2700.934 kb on - strandat 2700.934 kb on - strandat 2701.058 kb on + strand, within EX28DRAFT_2664at 2701.114 kb on - strand, within EX28DRAFT_2664at 2701.475 kb on + strand, within EX28DRAFT_2664at 2701.476 kb on - strand, within EX28DRAFT_2664at 2701.479 kb on + strand, within EX28DRAFT_2664at 2701.480 kb on - strand, within EX28DRAFT_2664at 2701.480 kb on - strand, within EX28DRAFT_2664at 2701.819 kb on + strand, within EX28DRAFT_2664

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,698,654 + EX28DRAFT_2661 0.71 -0.2
2,698,807 + +0.0
2,698,857 + +0.3
2,698,858 - -0.7
2,699,107 + EX28DRAFT_2662 0.35 +0.5
2,699,108 - EX28DRAFT_2662 0.35 -0.2
2,699,110 + EX28DRAFT_2662 0.35 -0.3
2,699,111 - EX28DRAFT_2662 0.35 +0.1
2,699,161 + EX28DRAFT_2662 0.42 +0.2
2,699,161 + EX28DRAFT_2662 0.42 -0.2
2,699,161 + EX28DRAFT_2662 0.42 +0.3
2,699,188 + EX28DRAFT_2662 0.45 -0.4
2,699,188 + EX28DRAFT_2662 0.45 +0.1
2,699,189 - EX28DRAFT_2662 0.45 -0.5
2,699,193 - EX28DRAFT_2662 0.46 +0.2
2,699,214 - EX28DRAFT_2662 0.48 -0.1
2,699,240 - EX28DRAFT_2662 0.52 -0.6
2,699,402 + EX28DRAFT_2662 0.72 +0.0
2,699,549 + +0.2
2,699,549 + +0.1
2,699,549 + +0.1
2,699,550 - -2.3
2,699,778 - EX28DRAFT_2663 0.13 -1.2
2,699,787 + EX28DRAFT_2663 0.14 +0.3
2,699,788 - EX28DRAFT_2663 0.14 -0.1
2,699,799 + EX28DRAFT_2663 0.15 -0.6
2,700,028 - EX28DRAFT_2663 0.33 +0.8
2,700,366 + EX28DRAFT_2663 0.61 +0.1
2,700,367 - EX28DRAFT_2663 0.61 -0.2
2,700,403 - EX28DRAFT_2663 0.64 +0.9
2,700,448 + EX28DRAFT_2663 0.67 -0.3
2,700,448 + EX28DRAFT_2663 0.67 +2.8
2,700,449 - EX28DRAFT_2663 0.67 -0.3
2,700,449 - EX28DRAFT_2663 0.67 +0.2
2,700,449 - EX28DRAFT_2663 0.67 +0.2
2,700,459 - EX28DRAFT_2663 0.68 -0.1
2,700,596 + EX28DRAFT_2663 0.79 -0.2
2,700,597 - EX28DRAFT_2663 0.79 +0.2
2,700,597 - EX28DRAFT_2663 0.79 -0.2
2,700,597 - EX28DRAFT_2663 0.79 +0.4
2,700,597 - EX28DRAFT_2663 0.79 +0.5
2,700,597 - EX28DRAFT_2663 0.79 +0.3
2,700,638 + EX28DRAFT_2663 0.83 +0.5
2,700,639 - EX28DRAFT_2663 0.83 -0.1
2,700,639 - EX28DRAFT_2663 0.83 -0.0
2,700,776 + -0.5
2,700,777 - +0.3
2,700,777 - +1.8
2,700,777 - -0.2
2,700,778 + -0.5
2,700,779 - +0.5
2,700,912 - +0.1
2,700,929 + +0.1
2,700,929 + +0.8
2,700,929 + -0.5
2,700,929 + +0.2
2,700,929 + -0.5
2,700,930 - -0.3
2,700,930 - +0.1
2,700,930 - +0.2
2,700,930 - +0.3
2,700,934 - -1.0
2,700,934 - -0.3
2,700,934 - -0.3
2,701,058 + EX28DRAFT_2664 0.15 -0.1
2,701,114 - EX28DRAFT_2664 0.19 -0.0
2,701,475 + EX28DRAFT_2664 0.46 +0.6
2,701,476 - EX28DRAFT_2664 0.46 +0.3
2,701,479 + EX28DRAFT_2664 0.46 +1.7
2,701,480 - EX28DRAFT_2664 0.46 -0.1
2,701,480 - EX28DRAFT_2664 0.46 -0.1
2,701,819 + EX28DRAFT_2664 0.72 -0.0

Or see this region's nucleotide sequence