Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2661 and EX28DRAFT_2662 overlap by 8 nucleotides EX28DRAFT_2662 and EX28DRAFT_2663 overlap by 8 nucleotides EX28DRAFT_2663 and EX28DRAFT_2664 are separated by 3 nucleotides
EX28DRAFT_2661: EX28DRAFT_2661 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit, at 2,698,199 to 2,698,837
_2661
EX28DRAFT_2662: EX28DRAFT_2662 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit, at 2,698,830 to 2,699,624
_2662
EX28DRAFT_2663: EX28DRAFT_2663 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit, at 2,699,617 to 2,700,852
_2663
EX28DRAFT_2664: EX28DRAFT_2664 - NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit, at 2,700,856 to 2,702,199
_2664
Position (kb)
2699
2700
2701 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2698.654 kb on + strand, within EX28DRAFT_2661 at 2698.807 kb on + strand at 2698.857 kb on + strand at 2698.858 kb on - strand at 2699.107 kb on + strand, within EX28DRAFT_2662 at 2699.108 kb on - strand, within EX28DRAFT_2662 at 2699.110 kb on + strand, within EX28DRAFT_2662 at 2699.111 kb on - strand, within EX28DRAFT_2662 at 2699.161 kb on + strand, within EX28DRAFT_2662 at 2699.161 kb on + strand, within EX28DRAFT_2662 at 2699.161 kb on + strand, within EX28DRAFT_2662 at 2699.188 kb on + strand, within EX28DRAFT_2662 at 2699.188 kb on + strand, within EX28DRAFT_2662 at 2699.189 kb on - strand, within EX28DRAFT_2662 at 2699.193 kb on - strand, within EX28DRAFT_2662 at 2699.214 kb on - strand, within EX28DRAFT_2662 at 2699.240 kb on - strand, within EX28DRAFT_2662 at 2699.402 kb on + strand, within EX28DRAFT_2662 at 2699.549 kb on + strand at 2699.549 kb on + strand at 2699.549 kb on + strand at 2699.550 kb on - strand at 2699.778 kb on - strand, within EX28DRAFT_2663 at 2699.787 kb on + strand, within EX28DRAFT_2663 at 2699.788 kb on - strand, within EX28DRAFT_2663 at 2699.799 kb on + strand, within EX28DRAFT_2663 at 2700.028 kb on - strand, within EX28DRAFT_2663 at 2700.366 kb on + strand, within EX28DRAFT_2663 at 2700.367 kb on - strand, within EX28DRAFT_2663 at 2700.403 kb on - strand, within EX28DRAFT_2663 at 2700.448 kb on + strand, within EX28DRAFT_2663 at 2700.448 kb on + strand, within EX28DRAFT_2663 at 2700.449 kb on - strand, within EX28DRAFT_2663 at 2700.449 kb on - strand, within EX28DRAFT_2663 at 2700.449 kb on - strand, within EX28DRAFT_2663 at 2700.459 kb on - strand, within EX28DRAFT_2663 at 2700.596 kb on + strand, within EX28DRAFT_2663 at 2700.597 kb on - strand, within EX28DRAFT_2663 at 2700.597 kb on - strand, within EX28DRAFT_2663 at 2700.597 kb on - strand, within EX28DRAFT_2663 at 2700.597 kb on - strand, within EX28DRAFT_2663 at 2700.597 kb on - strand, within EX28DRAFT_2663 at 2700.638 kb on + strand, within EX28DRAFT_2663 at 2700.639 kb on - strand, within EX28DRAFT_2663 at 2700.639 kb on - strand, within EX28DRAFT_2663 at 2700.776 kb on + strand at 2700.777 kb on - strand at 2700.777 kb on - strand at 2700.777 kb on - strand at 2700.778 kb on + strand at 2700.779 kb on - strand at 2700.912 kb on - strand at 2700.929 kb on + strand at 2700.929 kb on + strand at 2700.929 kb on + strand at 2700.929 kb on + strand at 2700.929 kb on + strand at 2700.930 kb on - strand at 2700.930 kb on - strand at 2700.930 kb on - strand at 2700.930 kb on - strand at 2700.934 kb on - strand at 2700.934 kb on - strand at 2700.934 kb on - strand at 2701.058 kb on + strand, within EX28DRAFT_2664 at 2701.114 kb on - strand, within EX28DRAFT_2664 at 2701.475 kb on + strand, within EX28DRAFT_2664 at 2701.476 kb on - strand, within EX28DRAFT_2664 at 2701.479 kb on + strand, within EX28DRAFT_2664 at 2701.480 kb on - strand, within EX28DRAFT_2664 at 2701.480 kb on - strand, within EX28DRAFT_2664 at 2701.819 kb on + strand, within EX28DRAFT_2664
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,698,654 + EX28DRAFT_2661 0.71 -0.2 2,698,807 + +0.0 2,698,857 + +0.3 2,698,858 - -0.7 2,699,107 + EX28DRAFT_2662 0.35 +0.5 2,699,108 - EX28DRAFT_2662 0.35 -0.2 2,699,110 + EX28DRAFT_2662 0.35 -0.3 2,699,111 - EX28DRAFT_2662 0.35 +0.1 2,699,161 + EX28DRAFT_2662 0.42 +0.2 2,699,161 + EX28DRAFT_2662 0.42 -0.2 2,699,161 + EX28DRAFT_2662 0.42 +0.3 2,699,188 + EX28DRAFT_2662 0.45 -0.4 2,699,188 + EX28DRAFT_2662 0.45 +0.1 2,699,189 - EX28DRAFT_2662 0.45 -0.5 2,699,193 - EX28DRAFT_2662 0.46 +0.2 2,699,214 - EX28DRAFT_2662 0.48 -0.1 2,699,240 - EX28DRAFT_2662 0.52 -0.6 2,699,402 + EX28DRAFT_2662 0.72 +0.0 2,699,549 + +0.2 2,699,549 + +0.1 2,699,549 + +0.1 2,699,550 - -2.3 2,699,778 - EX28DRAFT_2663 0.13 -1.2 2,699,787 + EX28DRAFT_2663 0.14 +0.3 2,699,788 - EX28DRAFT_2663 0.14 -0.1 2,699,799 + EX28DRAFT_2663 0.15 -0.6 2,700,028 - EX28DRAFT_2663 0.33 +0.8 2,700,366 + EX28DRAFT_2663 0.61 +0.1 2,700,367 - EX28DRAFT_2663 0.61 -0.2 2,700,403 - EX28DRAFT_2663 0.64 +0.9 2,700,448 + EX28DRAFT_2663 0.67 -0.3 2,700,448 + EX28DRAFT_2663 0.67 +2.8 2,700,449 - EX28DRAFT_2663 0.67 -0.3 2,700,449 - EX28DRAFT_2663 0.67 +0.2 2,700,449 - EX28DRAFT_2663 0.67 +0.2 2,700,459 - EX28DRAFT_2663 0.68 -0.1 2,700,596 + EX28DRAFT_2663 0.79 -0.2 2,700,597 - EX28DRAFT_2663 0.79 +0.2 2,700,597 - EX28DRAFT_2663 0.79 -0.2 2,700,597 - EX28DRAFT_2663 0.79 +0.4 2,700,597 - EX28DRAFT_2663 0.79 +0.5 2,700,597 - EX28DRAFT_2663 0.79 +0.3 2,700,638 + EX28DRAFT_2663 0.83 +0.5 2,700,639 - EX28DRAFT_2663 0.83 -0.1 2,700,639 - EX28DRAFT_2663 0.83 -0.0 2,700,776 + -0.5 2,700,777 - +0.3 2,700,777 - +1.8 2,700,777 - -0.2 2,700,778 + -0.5 2,700,779 - +0.5 2,700,912 - +0.1 2,700,929 + +0.1 2,700,929 + +0.8 2,700,929 + -0.5 2,700,929 + +0.2 2,700,929 + -0.5 2,700,930 - -0.3 2,700,930 - +0.1 2,700,930 - +0.2 2,700,930 - +0.3 2,700,934 - -1.0 2,700,934 - -0.3 2,700,934 - -0.3 2,701,058 + EX28DRAFT_2664 0.15 -0.1 2,701,114 - EX28DRAFT_2664 0.19 -0.0 2,701,475 + EX28DRAFT_2664 0.46 +0.6 2,701,476 - EX28DRAFT_2664 0.46 +0.3 2,701,479 + EX28DRAFT_2664 0.46 +1.7 2,701,480 - EX28DRAFT_2664 0.46 -0.1 2,701,480 - EX28DRAFT_2664 0.46 -0.1 2,701,819 + EX28DRAFT_2664 0.72 -0.0
Or see this region's nucleotide sequence