Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2583 and EX28DRAFT_2584 are separated by 143 nucleotides EX28DRAFT_2584 and EX28DRAFT_2585 are separated by 97 nucleotides EX28DRAFT_2585 and EX28DRAFT_2586 are separated by 14 nucleotides
EX28DRAFT_2583: EX28DRAFT_2583 - shikimate kinase (EC 2.7.1.71), at 2,618,901 to 2,619,425
_2583
EX28DRAFT_2584: EX28DRAFT_2584 - Uncharacterized protein conserved in bacteria, at 2,619,569 to 2,620,027
_2584
EX28DRAFT_2585: EX28DRAFT_2585 - pyrroline-5-carboxylate reductase, at 2,620,125 to 2,620,934
_2585
EX28DRAFT_2586: EX28DRAFT_2586 - diguanylate cyclase (GGDEF) domain, at 2,620,949 to 2,622,052
_2586
Position (kb)
2620
2621 Strain fitness (log2 ratio)
-2
-1
0
1 at 2619.156 kb on - strand, within EX28DRAFT_2583 at 2619.157 kb on + strand, within EX28DRAFT_2583 at 2619.158 kb on - strand, within EX28DRAFT_2583 at 2619.158 kb on - strand, within EX28DRAFT_2583 at 2619.158 kb on - strand, within EX28DRAFT_2583 at 2619.158 kb on - strand, within EX28DRAFT_2583 at 2619.158 kb on - strand, within EX28DRAFT_2583 at 2619.158 kb on - strand, within EX28DRAFT_2583 at 2619.406 kb on - strand at 2619.499 kb on + strand at 2620.028 kb on - strand at 2620.028 kb on - strand at 2620.084 kb on + strand at 2620.107 kb on + strand at 2620.725 kb on + strand, within EX28DRAFT_2585 at 2620.805 kb on + strand, within EX28DRAFT_2585 at 2620.806 kb on - strand, within EX28DRAFT_2585 at 2621.032 kb on - strand at 2621.308 kb on + strand, within EX28DRAFT_2586 at 2621.458 kb on + strand, within EX28DRAFT_2586 at 2621.458 kb on + strand, within EX28DRAFT_2586 at 2621.458 kb on + strand, within EX28DRAFT_2586 at 2621.459 kb on - strand, within EX28DRAFT_2586 at 2621.549 kb on + strand, within EX28DRAFT_2586 at 2621.549 kb on + strand, within EX28DRAFT_2586 at 2621.549 kb on + strand, within EX28DRAFT_2586 at 2621.850 kb on - strand, within EX28DRAFT_2586
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,619,156 - EX28DRAFT_2583 0.49 +0.2 2,619,157 + EX28DRAFT_2583 0.49 -2.3 2,619,158 - EX28DRAFT_2583 0.49 -0.2 2,619,158 - EX28DRAFT_2583 0.49 +0.4 2,619,158 - EX28DRAFT_2583 0.49 +0.5 2,619,158 - EX28DRAFT_2583 0.49 -0.7 2,619,158 - EX28DRAFT_2583 0.49 +0.5 2,619,158 - EX28DRAFT_2583 0.49 +0.6 2,619,406 - -0.2 2,619,499 + +0.5 2,620,028 - -1.1 2,620,028 - +0.5 2,620,084 + -0.0 2,620,107 + -0.4 2,620,725 + EX28DRAFT_2585 0.74 -2.6 2,620,805 + EX28DRAFT_2585 0.84 -1.4 2,620,806 - EX28DRAFT_2585 0.84 -2.5 2,621,032 - +0.0 2,621,308 + EX28DRAFT_2586 0.33 +0.1 2,621,458 + EX28DRAFT_2586 0.46 -1.1 2,621,458 + EX28DRAFT_2586 0.46 +0.0 2,621,458 + EX28DRAFT_2586 0.46 -0.4 2,621,459 - EX28DRAFT_2586 0.46 -0.6 2,621,549 + EX28DRAFT_2586 0.54 -0.6 2,621,549 + EX28DRAFT_2586 0.54 -0.5 2,621,549 + EX28DRAFT_2586 0.54 -0.9 2,621,850 - EX28DRAFT_2586 0.82 -0.8
Or see this region's nucleotide sequence