Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2578 and EX28DRAFT_2579 are separated by 36 nucleotides EX28DRAFT_2579 and EX28DRAFT_2580 are separated by 48 nucleotides EX28DRAFT_2580 and EX28DRAFT_2581 are separated by 71 nucleotides
EX28DRAFT_2578: EX28DRAFT_2578 - Transcriptional regulator/sugar kinase, at 2,615,399 to 2,616,391
_2578
EX28DRAFT_2579: EX28DRAFT_2579 - DNA recombination-dependent growth factor C, at 2,616,428 to 2,617,342
_2579
EX28DRAFT_2580: EX28DRAFT_2580 - Uncharacterized protein conserved in bacteria, at 2,617,391 to 2,617,678
_2580
EX28DRAFT_2581: EX28DRAFT_2581 - AroM protein, at 2,617,750 to 2,618,427
_2581
Position (kb)
2616
2617
2618 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2615.582 kb on - strand, within EX28DRAFT_2578 at 2615.743 kb on + strand, within EX28DRAFT_2578 at 2615.744 kb on - strand, within EX28DRAFT_2578 at 2615.756 kb on - strand, within EX28DRAFT_2578 at 2615.800 kb on + strand, within EX28DRAFT_2578 at 2615.801 kb on - strand, within EX28DRAFT_2578 at 2615.801 kb on - strand, within EX28DRAFT_2578 at 2616.093 kb on + strand, within EX28DRAFT_2578 at 2616.339 kb on + strand at 2616.340 kb on - strand at 2616.425 kb on - strand at 2616.515 kb on + strand at 2616.515 kb on + strand at 2616.515 kb on + strand at 2616.516 kb on - strand at 2616.516 kb on - strand at 2616.516 kb on - strand at 2616.517 kb on + strand at 2616.545 kb on - strand, within EX28DRAFT_2579 at 2616.877 kb on + strand, within EX28DRAFT_2579 at 2616.877 kb on + strand, within EX28DRAFT_2579 at 2616.877 kb on + strand, within EX28DRAFT_2579 at 2616.878 kb on - strand, within EX28DRAFT_2579 at 2617.226 kb on - strand, within EX28DRAFT_2579 at 2617.413 kb on + strand at 2617.413 kb on + strand at 2617.414 kb on - strand at 2617.575 kb on + strand, within EX28DRAFT_2580 at 2617.628 kb on - strand, within EX28DRAFT_2580 at 2617.690 kb on + strand at 2617.691 kb on - strand at 2617.693 kb on - strand at 2617.693 kb on - strand at 2617.699 kb on - strand at 2617.703 kb on - strand at 2617.715 kb on + strand at 2617.716 kb on - strand at 2617.716 kb on - strand at 2617.751 kb on + strand at 2617.796 kb on - strand at 2617.955 kb on + strand, within EX28DRAFT_2581 at 2617.955 kb on + strand, within EX28DRAFT_2581 at 2617.955 kb on + strand, within EX28DRAFT_2581 at 2618.016 kb on + strand, within EX28DRAFT_2581 at 2618.148 kb on + strand, within EX28DRAFT_2581 at 2618.179 kb on + strand, within EX28DRAFT_2581 at 2618.179 kb on + strand, within EX28DRAFT_2581 at 2618.180 kb on - strand, within EX28DRAFT_2581 at 2618.242 kb on + strand, within EX28DRAFT_2581 at 2618.246 kb on - strand, within EX28DRAFT_2581 at 2618.282 kb on + strand, within EX28DRAFT_2581 at 2618.282 kb on + strand, within EX28DRAFT_2581 at 2618.282 kb on + strand, within EX28DRAFT_2581 at 2618.326 kb on - strand, within EX28DRAFT_2581
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,615,582 - EX28DRAFT_2578 0.18 +1.4 2,615,743 + EX28DRAFT_2578 0.35 +1.2 2,615,744 - EX28DRAFT_2578 0.35 +1.6 2,615,756 - EX28DRAFT_2578 0.36 +1.9 2,615,800 + EX28DRAFT_2578 0.40 +1.7 2,615,801 - EX28DRAFT_2578 0.40 +1.0 2,615,801 - EX28DRAFT_2578 0.40 +1.6 2,616,093 + EX28DRAFT_2578 0.70 +1.2 2,616,339 + +0.9 2,616,340 - -2.5 2,616,425 - -3.6 2,616,515 + +0.0 2,616,515 + -0.5 2,616,515 + +0.1 2,616,516 - -1.9 2,616,516 - -0.4 2,616,516 - -0.6 2,616,517 + -0.1 2,616,545 - EX28DRAFT_2579 0.13 -3.8 2,616,877 + EX28DRAFT_2579 0.49 -1.4 2,616,877 + EX28DRAFT_2579 0.49 +1.0 2,616,877 + EX28DRAFT_2579 0.49 -0.3 2,616,878 - EX28DRAFT_2579 0.49 -0.5 2,617,226 - EX28DRAFT_2579 0.87 -1.0 2,617,413 + -0.8 2,617,413 + -0.1 2,617,414 - +0.7 2,617,575 + EX28DRAFT_2580 0.64 -0.0 2,617,628 - EX28DRAFT_2580 0.82 +0.1 2,617,690 + -0.5 2,617,691 - +1.3 2,617,693 - +0.2 2,617,693 - -0.3 2,617,699 - -0.2 2,617,703 - -0.4 2,617,715 + +0.9 2,617,716 - +0.3 2,617,716 - -0.4 2,617,751 + +1.1 2,617,796 - -1.5 2,617,955 + EX28DRAFT_2581 0.30 -0.3 2,617,955 + EX28DRAFT_2581 0.30 -0.1 2,617,955 + EX28DRAFT_2581 0.30 +0.1 2,618,016 + EX28DRAFT_2581 0.39 +0.1 2,618,148 + EX28DRAFT_2581 0.59 -0.5 2,618,179 + EX28DRAFT_2581 0.63 -0.1 2,618,179 + EX28DRAFT_2581 0.63 +0.1 2,618,180 - EX28DRAFT_2581 0.63 +0.5 2,618,242 + EX28DRAFT_2581 0.73 -1.1 2,618,246 - EX28DRAFT_2581 0.73 +0.2 2,618,282 + EX28DRAFT_2581 0.78 -1.9 2,618,282 + EX28DRAFT_2581 0.78 -0.1 2,618,282 + EX28DRAFT_2581 0.78 +0.0 2,618,326 - EX28DRAFT_2581 0.85 +0.2
Or see this region's nucleotide sequence