Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2497

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2496 and EX28DRAFT_2497 are separated by 510 nucleotidesEX28DRAFT_2497 and EX28DRAFT_2498 are separated by 27 nucleotidesEX28DRAFT_2498 and EX28DRAFT_2499 are separated by 205 nucleotides EX28DRAFT_2496: EX28DRAFT_2496 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 2,526,944 to 2,530,090 _2496 EX28DRAFT_2497: EX28DRAFT_2497 - Biofilm formation regulator YbaJ, at 2,530,601 to 2,530,975 _2497 EX28DRAFT_2498: EX28DRAFT_2498 - Haemolysin expression modulating protein, at 2,531,003 to 2,531,221 _2498 EX28DRAFT_2499: EX28DRAFT_2499 - Acetyltransferase (isoleucine patch superfamily), at 2,531,427 to 2,531,978 _2499 Position (kb) 2530 2531Strain fitness (log2 ratio) -1 0 1 2at 2529.717 kb on - strand, within EX28DRAFT_2496at 2529.717 kb on - strand, within EX28DRAFT_2496at 2529.717 kb on - strand, within EX28DRAFT_2496at 2529.768 kb on + strand, within EX28DRAFT_2496at 2529.772 kb on + strand, within EX28DRAFT_2496at 2529.948 kb on + strandat 2529.953 kb on - strandat 2530.194 kb on - strandat 2530.301 kb on - strandat 2530.308 kb on + strandat 2530.343 kb on + strandat 2530.384 kb on - strandat 2530.496 kb on + strandat 2530.496 kb on + strandat 2530.497 kb on - strandat 2530.502 kb on + strandat 2530.530 kb on - strandat 2530.530 kb on - strandat 2530.534 kb on - strandat 2530.534 kb on - strandat 2530.534 kb on - strandat 2530.544 kb on + strandat 2530.781 kb on - strand, within EX28DRAFT_2497at 2530.781 kb on - strand, within EX28DRAFT_2497at 2530.781 kb on - strand, within EX28DRAFT_2497at 2530.784 kb on + strand, within EX28DRAFT_2497at 2530.811 kb on - strand, within EX28DRAFT_2497at 2530.835 kb on + strand, within EX28DRAFT_2497at 2530.903 kb on + strand, within EX28DRAFT_2497at 2530.988 kb on + strandat 2530.989 kb on - strandat 2531.002 kb on + strandat 2531.132 kb on + strand, within EX28DRAFT_2498at 2531.194 kb on + strand, within EX28DRAFT_2498at 2531.263 kb on + strandat 2531.267 kb on + strandat 2531.267 kb on + strandat 2531.267 kb on + strandat 2531.268 kb on - strandat 2531.272 kb on - strandat 2531.521 kb on + strand, within EX28DRAFT_2499at 2531.522 kb on - strand, within EX28DRAFT_2499at 2531.522 kb on - strand, within EX28DRAFT_2499at 2531.530 kb on - strand, within EX28DRAFT_2499at 2531.607 kb on + strand, within EX28DRAFT_2499at 2531.607 kb on + strand, within EX28DRAFT_2499at 2531.607 kb on + strand, within EX28DRAFT_2499at 2531.607 kb on + strand, within EX28DRAFT_2499at 2531.608 kb on - strand, within EX28DRAFT_2499at 2531.608 kb on - strand, within EX28DRAFT_2499at 2531.609 kb on + strand, within EX28DRAFT_2499at 2531.610 kb on - strand, within EX28DRAFT_2499at 2531.610 kb on - strand, within EX28DRAFT_2499at 2531.610 kb on - strand, within EX28DRAFT_2499at 2531.610 kb on - strand, within EX28DRAFT_2499at 2531.611 kb on + strand, within EX28DRAFT_2499at 2531.612 kb on - strand, within EX28DRAFT_2499at 2531.612 kb on - strand, within EX28DRAFT_2499at 2531.635 kb on - strand, within EX28DRAFT_2499at 2531.643 kb on - strand, within EX28DRAFT_2499at 2531.643 kb on - strand, within EX28DRAFT_2499at 2531.650 kb on - strand, within EX28DRAFT_2499at 2531.747 kb on + strand, within EX28DRAFT_2499at 2531.747 kb on + strand, within EX28DRAFT_2499at 2531.751 kb on + strand, within EX28DRAFT_2499at 2531.751 kb on + strand, within EX28DRAFT_2499at 2531.752 kb on - strand, within EX28DRAFT_2499

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
2,529,717 - EX28DRAFT_2496 0.88 +0.2
2,529,717 - EX28DRAFT_2496 0.88 -0.2
2,529,717 - EX28DRAFT_2496 0.88 +1.1
2,529,768 + EX28DRAFT_2496 0.90 -0.1
2,529,772 + EX28DRAFT_2496 0.90 +0.1
2,529,948 + -0.8
2,529,953 - -0.3
2,530,194 - -0.0
2,530,301 - +0.3
2,530,308 + +2.1
2,530,343 + +0.1
2,530,384 - -0.5
2,530,496 + -0.1
2,530,496 + +0.0
2,530,497 - +0.1
2,530,502 + +0.9
2,530,530 - -1.6
2,530,530 - -1.0
2,530,534 - -0.8
2,530,534 - -1.0
2,530,534 - -0.4
2,530,544 + +0.2
2,530,781 - EX28DRAFT_2497 0.48 -1.7
2,530,781 - EX28DRAFT_2497 0.48 -1.3
2,530,781 - EX28DRAFT_2497 0.48 -1.7
2,530,784 + EX28DRAFT_2497 0.49 -0.5
2,530,811 - EX28DRAFT_2497 0.56 -0.8
2,530,835 + EX28DRAFT_2497 0.62 -0.4
2,530,903 + EX28DRAFT_2497 0.81 -0.6
2,530,988 + -0.0
2,530,989 - -1.4
2,531,002 + -0.6
2,531,132 + EX28DRAFT_2498 0.59 +0.4
2,531,194 + EX28DRAFT_2498 0.87 -0.6
2,531,263 + +0.2
2,531,267 + +0.4
2,531,267 + +0.2
2,531,267 + +0.4
2,531,268 - +0.4
2,531,272 - +0.4
2,531,521 + EX28DRAFT_2499 0.17 +0.8
2,531,522 - EX28DRAFT_2499 0.17 +0.7
2,531,522 - EX28DRAFT_2499 0.17 -0.2
2,531,530 - EX28DRAFT_2499 0.19 +1.4
2,531,607 + EX28DRAFT_2499 0.33 +0.6
2,531,607 + EX28DRAFT_2499 0.33 -0.3
2,531,607 + EX28DRAFT_2499 0.33 +0.5
2,531,607 + EX28DRAFT_2499 0.33 +0.0
2,531,608 - EX28DRAFT_2499 0.33 +1.4
2,531,608 - EX28DRAFT_2499 0.33 +0.6
2,531,609 + EX28DRAFT_2499 0.33 +0.0
2,531,610 - EX28DRAFT_2499 0.33 -0.2
2,531,610 - EX28DRAFT_2499 0.33 -0.2
2,531,610 - EX28DRAFT_2499 0.33 +0.1
2,531,610 - EX28DRAFT_2499 0.33 -0.4
2,531,611 + EX28DRAFT_2499 0.33 -0.5
2,531,612 - EX28DRAFT_2499 0.34 +0.5
2,531,612 - EX28DRAFT_2499 0.34 -0.4
2,531,635 - EX28DRAFT_2499 0.38 +0.5
2,531,643 - EX28DRAFT_2499 0.39 -0.6
2,531,643 - EX28DRAFT_2499 0.39 -1.3
2,531,650 - EX28DRAFT_2499 0.40 +0.2
2,531,747 + EX28DRAFT_2499 0.58 +1.3
2,531,747 + EX28DRAFT_2499 0.58 +0.1
2,531,751 + EX28DRAFT_2499 0.59 -0.2
2,531,751 + EX28DRAFT_2499 0.59 +0.3
2,531,752 - EX28DRAFT_2499 0.59 +0.6

Or see this region's nucleotide sequence