Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2492

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2490 and EX28DRAFT_2491 are separated by 50 nucleotidesEX28DRAFT_2491 and EX28DRAFT_2492 are separated by 14 nucleotidesEX28DRAFT_2492 and EX28DRAFT_2493 are separated by 54 nucleotides EX28DRAFT_2490: EX28DRAFT_2490 - Uncharacterized protein conserved in bacteria, at 2,520,289 to 2,520,666 _2490 EX28DRAFT_2491: EX28DRAFT_2491 - restart primosome assembly protein PriC, at 2,520,717 to 2,521,244 _2491 EX28DRAFT_2492: EX28DRAFT_2492 - Protein of unknown function (DUF2496), at 2,521,259 to 2,521,417 _2492 EX28DRAFT_2493: EX28DRAFT_2493 - Small-conductance mechanosensitive channel, at 2,521,472 to 2,524,819 _2493 Position (kb) 2521 2522Strain fitness (log2 ratio) -1 0 1at 2520.340 kb on - strand, within EX28DRAFT_2490at 2520.409 kb on - strand, within EX28DRAFT_2490at 2520.513 kb on - strand, within EX28DRAFT_2490at 2520.654 kb on + strandat 2520.700 kb on + strandat 2520.779 kb on + strand, within EX28DRAFT_2491at 2520.861 kb on + strand, within EX28DRAFT_2491at 2520.861 kb on + strand, within EX28DRAFT_2491at 2521.147 kb on + strand, within EX28DRAFT_2491at 2521.148 kb on - strand, within EX28DRAFT_2491at 2521.309 kb on + strand, within EX28DRAFT_2492at 2521.351 kb on + strand, within EX28DRAFT_2492at 2521.466 kb on - strandat 2521.519 kb on + strandat 2521.520 kb on - strandat 2521.520 kb on - strandat 2521.520 kb on - strandat 2521.576 kb on + strandat 2521.577 kb on - strandat 2521.577 kb on - strandat 2521.632 kb on + strandat 2521.661 kb on + strandat 2521.797 kb on + strandat 2521.798 kb on - strandat 2522.146 kb on + strand, within EX28DRAFT_2493at 2522.147 kb on - strand, within EX28DRAFT_2493at 2522.157 kb on + strand, within EX28DRAFT_2493at 2522.157 kb on + strand, within EX28DRAFT_2493at 2522.157 kb on + strand, within EX28DRAFT_2493at 2522.158 kb on - strand, within EX28DRAFT_2493at 2522.346 kb on + strand, within EX28DRAFT_2493at 2522.346 kb on + strand, within EX28DRAFT_2493at 2522.347 kb on - strand, within EX28DRAFT_2493at 2522.363 kb on - strand, within EX28DRAFT_2493at 2522.373 kb on + strand, within EX28DRAFT_2493at 2522.390 kb on - strand, within EX28DRAFT_2493

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
2,520,340 - EX28DRAFT_2490 0.13 +0.2
2,520,409 - EX28DRAFT_2490 0.32 -0.2
2,520,513 - EX28DRAFT_2490 0.59 -0.9
2,520,654 + +0.6
2,520,700 + -1.0
2,520,779 + EX28DRAFT_2491 0.12 +1.3
2,520,861 + EX28DRAFT_2491 0.27 +1.0
2,520,861 + EX28DRAFT_2491 0.27 -0.8
2,521,147 + EX28DRAFT_2491 0.81 -0.1
2,521,148 - EX28DRAFT_2491 0.82 +0.6
2,521,309 + EX28DRAFT_2492 0.31 -1.1
2,521,351 + EX28DRAFT_2492 0.58 -0.4
2,521,466 - +0.4
2,521,519 + -0.1
2,521,520 - +0.1
2,521,520 - -0.6
2,521,520 - -1.1
2,521,576 + -0.1
2,521,577 - +1.3
2,521,577 - +0.1
2,521,632 + -0.2
2,521,661 + -1.1
2,521,797 + +0.1
2,521,798 - +0.2
2,522,146 + EX28DRAFT_2493 0.20 +0.1
2,522,147 - EX28DRAFT_2493 0.20 +0.5
2,522,157 + EX28DRAFT_2493 0.20 -0.0
2,522,157 + EX28DRAFT_2493 0.20 -0.3
2,522,157 + EX28DRAFT_2493 0.20 -0.3
2,522,158 - EX28DRAFT_2493 0.20 +0.8
2,522,346 + EX28DRAFT_2493 0.26 -0.1
2,522,346 + EX28DRAFT_2493 0.26 +0.4
2,522,347 - EX28DRAFT_2493 0.26 +0.3
2,522,363 - EX28DRAFT_2493 0.27 -0.1
2,522,373 + EX28DRAFT_2493 0.27 +0.3
2,522,390 - EX28DRAFT_2493 0.27 -0.3

Or see this region's nucleotide sequence