Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2474

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2471 and EX28DRAFT_2472 overlap by 4 nucleotidesEX28DRAFT_2472 and EX28DRAFT_2473 overlap by 4 nucleotidesEX28DRAFT_2473 and EX28DRAFT_2474 are separated by 108 nucleotidesEX28DRAFT_2474 and EX28DRAFT_2475 are separated by 50 nucleotidesEX28DRAFT_2475 and EX28DRAFT_2476 overlap by 2 nucleotides EX28DRAFT_2471: EX28DRAFT_2471 - Membrane protease subunits, stomatin/prohibitin homologs, at 2,500,249 to 2,501,163 _2471 EX28DRAFT_2472: EX28DRAFT_2472 - Membrane protein implicated in regulation of membrane protease activity, at 2,501,160 to 2,501,612 _2472 EX28DRAFT_2473: EX28DRAFT_2473 - Cu(I)-responsive transcriptional regulator, at 2,501,609 to 2,502,019 _2473 EX28DRAFT_2474: EX28DRAFT_2474 - copper-(or silver)-translocating P-type ATPase, at 2,502,128 to 2,504,626 _2474 EX28DRAFT_2475: EX28DRAFT_2475 - Uncharacterized protein conserved in bacteria, at 2,504,677 to 2,505,471 _2475 EX28DRAFT_2476: EX28DRAFT_2476 - RNA, at 2,505,470 to 2,505,548 _2476 Position (kb) 2502 2503 2504 2505Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2501.462 kb on + strand, within EX28DRAFT_2472at 2501.890 kb on + strand, within EX28DRAFT_2473at 2501.961 kb on + strand, within EX28DRAFT_2473at 2502.014 kb on - strandat 2502.063 kb on + strandat 2502.064 kb on - strandat 2502.097 kb on - strandat 2502.097 kb on - strandat 2502.113 kb on + strandat 2502.114 kb on - strandat 2502.139 kb on + strandat 2502.321 kb on + strandat 2502.837 kb on - strand, within EX28DRAFT_2474at 2502.920 kb on + strand, within EX28DRAFT_2474at 2502.921 kb on - strand, within EX28DRAFT_2474at 2502.921 kb on - strand, within EX28DRAFT_2474at 2502.925 kb on + strand, within EX28DRAFT_2474at 2502.977 kb on + strand, within EX28DRAFT_2474at 2502.980 kb on + strand, within EX28DRAFT_2474at 2502.981 kb on - strand, within EX28DRAFT_2474at 2502.981 kb on - strand, within EX28DRAFT_2474at 2503.083 kb on + strand, within EX28DRAFT_2474at 2504.208 kb on + strand, within EX28DRAFT_2474at 2504.371 kb on + strand, within EX28DRAFT_2474at 2504.467 kb on + strandat 2504.468 kb on - strandat 2504.468 kb on - strandat 2504.471 kb on + strandat 2504.471 kb on + strandat 2504.471 kb on + strandat 2504.472 kb on - strandat 2504.473 kb on + strandat 2504.474 kb on - strandat 2504.474 kb on - strandat 2504.695 kb on - strandat 2504.696 kb on + strandat 2504.696 kb on + strandat 2504.814 kb on + strand, within EX28DRAFT_2475at 2504.814 kb on + strand, within EX28DRAFT_2475at 2504.815 kb on - strand, within EX28DRAFT_2475at 2504.840 kb on + strand, within EX28DRAFT_2475at 2504.841 kb on - strand, within EX28DRAFT_2475at 2505.219 kb on + strand, within EX28DRAFT_2475at 2505.337 kb on + strand, within EX28DRAFT_2475at 2505.338 kb on - strand, within EX28DRAFT_2475at 2505.338 kb on - strand, within EX28DRAFT_2475at 2505.406 kb on + strandat 2505.406 kb on + strandat 2505.429 kb on - strandat 2505.437 kb on - strandat 2505.437 kb on - strandat 2505.484 kb on + strand, within EX28DRAFT_2476at 2505.491 kb on - strand, within EX28DRAFT_2476at 2505.491 kb on - strand, within EX28DRAFT_2476at 2505.527 kb on - strand, within EX28DRAFT_2476at 2505.527 kb on - strand, within EX28DRAFT_2476at 2505.585 kb on + strandat 2505.588 kb on + strandat 2505.589 kb on - strandat 2505.606 kb on + strandat 2505.606 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,501,462 + EX28DRAFT_2472 0.67 -0.2
2,501,890 + EX28DRAFT_2473 0.68 -0.5
2,501,961 + EX28DRAFT_2473 0.86 -0.1
2,502,014 - +1.2
2,502,063 + +0.3
2,502,064 - +1.0
2,502,097 - +1.5
2,502,097 - +0.7
2,502,113 + +0.3
2,502,114 - -1.0
2,502,139 + -1.0
2,502,321 + +0.4
2,502,837 - EX28DRAFT_2474 0.28 -1.0
2,502,920 + EX28DRAFT_2474 0.32 +0.2
2,502,921 - EX28DRAFT_2474 0.32 -2.0
2,502,921 - EX28DRAFT_2474 0.32 -2.4
2,502,925 + EX28DRAFT_2474 0.32 -1.1
2,502,977 + EX28DRAFT_2474 0.34 -1.6
2,502,980 + EX28DRAFT_2474 0.34 -0.9
2,502,981 - EX28DRAFT_2474 0.34 -1.3
2,502,981 - EX28DRAFT_2474 0.34 -4.3
2,503,083 + EX28DRAFT_2474 0.38 +0.2
2,504,208 + EX28DRAFT_2474 0.83 +0.0
2,504,371 + EX28DRAFT_2474 0.90 -2.0
2,504,467 + -0.0
2,504,468 - -0.6
2,504,468 - -1.7
2,504,471 + -1.1
2,504,471 + +0.7
2,504,471 + -0.5
2,504,472 - -0.3
2,504,473 + -0.4
2,504,474 - -0.9
2,504,474 - -1.2
2,504,695 - -0.6
2,504,696 + +0.6
2,504,696 + -0.6
2,504,814 + EX28DRAFT_2475 0.17 +0.2
2,504,814 + EX28DRAFT_2475 0.17 -0.6
2,504,815 - EX28DRAFT_2475 0.17 +0.6
2,504,840 + EX28DRAFT_2475 0.21 +0.7
2,504,841 - EX28DRAFT_2475 0.21 -0.7
2,505,219 + EX28DRAFT_2475 0.68 -0.1
2,505,337 + EX28DRAFT_2475 0.83 -0.1
2,505,338 - EX28DRAFT_2475 0.83 -0.7
2,505,338 - EX28DRAFT_2475 0.83 +0.4
2,505,406 + -0.0
2,505,406 + +0.1
2,505,429 - +0.8
2,505,437 - -0.3
2,505,437 - +0.1
2,505,484 + EX28DRAFT_2476 0.18 -0.0
2,505,491 - EX28DRAFT_2476 0.27 +1.1
2,505,491 - EX28DRAFT_2476 0.27 +0.8
2,505,527 - EX28DRAFT_2476 0.72 -0.0
2,505,527 - EX28DRAFT_2476 0.72 -1.3
2,505,585 + -0.9
2,505,588 + -0.2
2,505,589 - +0.5
2,505,606 + +0.3
2,505,606 + +0.6

Or see this region's nucleotide sequence