Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2419 and EX28DRAFT_2420 are separated by 105 nucleotides EX28DRAFT_2420 and EX28DRAFT_2421 are separated by 478 nucleotides EX28DRAFT_2421 and EX28DRAFT_2422 are separated by 82 nucleotides
EX28DRAFT_2419: EX28DRAFT_2419 - RND family efflux transporter, MFP subunit, at 2,444,398 to 2,445,462
_2419
EX28DRAFT_2420: EX28DRAFT_2420 - ATPase, P-type (transporting), HAD superfamily, subfamily IC, at 2,445,568 to 2,448,276
_2420
EX28DRAFT_2421: EX28DRAFT_2421 - Protein of unknown function (DUF1158), at 2,448,755 to 2,449,003
_2421
EX28DRAFT_2422: EX28DRAFT_2422 - Helix-turn-helix domain, at 2,449,086 to 2,449,460
_2422
Position (kb)
2445
2446
2447
2448
2449 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2444.993 kb on + strand, within EX28DRAFT_2419 at 2444.993 kb on + strand, within EX28DRAFT_2419 at 2444.994 kb on - strand, within EX28DRAFT_2419 at 2445.109 kb on - strand, within EX28DRAFT_2419 at 2445.176 kb on - strand, within EX28DRAFT_2419 at 2445.176 kb on - strand, within EX28DRAFT_2419 at 2445.254 kb on + strand, within EX28DRAFT_2419 at 2445.254 kb on + strand, within EX28DRAFT_2419 at 2445.254 kb on + strand, within EX28DRAFT_2419 at 2445.711 kb on - strand at 2445.714 kb on + strand at 2445.714 kb on + strand at 2445.816 kb on + strand at 2445.968 kb on + strand, within EX28DRAFT_2420 at 2446.417 kb on - strand, within EX28DRAFT_2420 at 2446.448 kb on + strand, within EX28DRAFT_2420 at 2446.449 kb on - strand, within EX28DRAFT_2420 at 2446.731 kb on + strand, within EX28DRAFT_2420 at 2446.732 kb on - strand, within EX28DRAFT_2420 at 2446.732 kb on - strand, within EX28DRAFT_2420 at 2446.807 kb on + strand, within EX28DRAFT_2420 at 2446.808 kb on - strand, within EX28DRAFT_2420 at 2446.808 kb on - strand, within EX28DRAFT_2420 at 2446.920 kb on - strand, within EX28DRAFT_2420 at 2446.920 kb on - strand, within EX28DRAFT_2420 at 2446.920 kb on - strand, within EX28DRAFT_2420 at 2446.920 kb on - strand, within EX28DRAFT_2420 at 2446.920 kb on - strand, within EX28DRAFT_2420 at 2447.215 kb on - strand, within EX28DRAFT_2420 at 2447.370 kb on + strand, within EX28DRAFT_2420 at 2447.371 kb on - strand, within EX28DRAFT_2420 at 2447.709 kb on + strand, within EX28DRAFT_2420 at 2447.769 kb on + strand, within EX28DRAFT_2420 at 2447.819 kb on - strand, within EX28DRAFT_2420 at 2447.826 kb on + strand, within EX28DRAFT_2420 at 2447.826 kb on + strand, within EX28DRAFT_2420 at 2447.908 kb on - strand, within EX28DRAFT_2420 at 2447.908 kb on - strand, within EX28DRAFT_2420 at 2447.916 kb on + strand, within EX28DRAFT_2420 at 2447.963 kb on - strand, within EX28DRAFT_2420 at 2448.001 kb on - strand, within EX28DRAFT_2420 at 2448.053 kb on + strand at 2448.070 kb on - strand at 2448.212 kb on - strand at 2448.334 kb on - strand at 2448.370 kb on - strand at 2448.561 kb on - strand at 2448.619 kb on + strand at 2448.659 kb on + strand at 2448.798 kb on + strand, within EX28DRAFT_2421 at 2448.906 kb on - strand, within EX28DRAFT_2421 at 2449.268 kb on - strand, within EX28DRAFT_2422
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,444,993 + EX28DRAFT_2419 0.56 +0.2 2,444,993 + EX28DRAFT_2419 0.56 -0.4 2,444,994 - EX28DRAFT_2419 0.56 -0.1 2,445,109 - EX28DRAFT_2419 0.67 +0.3 2,445,176 - EX28DRAFT_2419 0.73 -0.6 2,445,176 - EX28DRAFT_2419 0.73 -0.2 2,445,254 + EX28DRAFT_2419 0.80 +0.0 2,445,254 + EX28DRAFT_2419 0.80 +0.0 2,445,254 + EX28DRAFT_2419 0.80 +0.1 2,445,711 - +0.2 2,445,714 + -0.0 2,445,714 + +0.2 2,445,816 + -2.9 2,445,968 + EX28DRAFT_2420 0.15 -0.3 2,446,417 - EX28DRAFT_2420 0.31 -0.0 2,446,448 + EX28DRAFT_2420 0.32 -0.9 2,446,449 - EX28DRAFT_2420 0.33 -0.2 2,446,731 + EX28DRAFT_2420 0.43 -0.3 2,446,732 - EX28DRAFT_2420 0.43 -0.2 2,446,732 - EX28DRAFT_2420 0.43 +0.4 2,446,807 + EX28DRAFT_2420 0.46 -0.1 2,446,808 - EX28DRAFT_2420 0.46 +0.6 2,446,808 - EX28DRAFT_2420 0.46 -0.1 2,446,920 - EX28DRAFT_2420 0.50 +0.8 2,446,920 - EX28DRAFT_2420 0.50 -0.6 2,446,920 - EX28DRAFT_2420 0.50 +1.5 2,446,920 - EX28DRAFT_2420 0.50 +0.6 2,446,920 - EX28DRAFT_2420 0.50 -1.6 2,447,215 - EX28DRAFT_2420 0.61 +0.6 2,447,370 + EX28DRAFT_2420 0.67 +1.7 2,447,371 - EX28DRAFT_2420 0.67 +0.4 2,447,709 + EX28DRAFT_2420 0.79 +0.9 2,447,769 + EX28DRAFT_2420 0.81 -0.2 2,447,819 - EX28DRAFT_2420 0.83 +0.3 2,447,826 + EX28DRAFT_2420 0.83 +0.6 2,447,826 + EX28DRAFT_2420 0.83 +0.0 2,447,908 - EX28DRAFT_2420 0.86 +0.0 2,447,908 - EX28DRAFT_2420 0.86 +0.0 2,447,916 + EX28DRAFT_2420 0.87 -0.7 2,447,963 - EX28DRAFT_2420 0.88 +0.3 2,448,001 - EX28DRAFT_2420 0.90 -0.4 2,448,053 + -0.6 2,448,070 - -0.0 2,448,212 - +0.6 2,448,334 - -0.1 2,448,370 - -0.9 2,448,561 - -0.4 2,448,619 + -0.2 2,448,659 + +0.0 2,448,798 + EX28DRAFT_2421 0.17 -1.5 2,448,906 - EX28DRAFT_2421 0.61 -0.4 2,449,268 - EX28DRAFT_2422 0.49 +0.1
Or see this region's nucleotide sequence