Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2371 and EX28DRAFT_2372 overlap by 1 nucleotides EX28DRAFT_2372 and EX28DRAFT_2373 are separated by 10 nucleotides EX28DRAFT_2373 and EX28DRAFT_2374 are separated by 9 nucleotides
EX28DRAFT_2371: EX28DRAFT_2371 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 2,390,946 to 2,391,698
_2371
EX28DRAFT_2372: EX28DRAFT_2372 - Isochorismate hydrolase, at 2,391,698 to 2,392,552
_2372
EX28DRAFT_2373: EX28DRAFT_2373 - 2,3-dihydroxybenzoate-AMP ligase, at 2,392,563 to 2,394,173
_2373
EX28DRAFT_2374: EX28DRAFT_2374 - isochorismate synthase (EC 5.4.4.2), at 2,394,183 to 2,395,358
_2374
Position (kb)
2392
2393
2394
2395 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2391.677 kb on + strand at 2391.978 kb on + strand, within EX28DRAFT_2372 at 2391.979 kb on - strand, within EX28DRAFT_2372 at 2391.979 kb on - strand, within EX28DRAFT_2372 at 2391.979 kb on - strand, within EX28DRAFT_2372 at 2392.057 kb on + strand, within EX28DRAFT_2372 at 2392.098 kb on + strand, within EX28DRAFT_2372 at 2392.100 kb on + strand, within EX28DRAFT_2372 at 2392.101 kb on - strand, within EX28DRAFT_2372 at 2392.339 kb on + strand, within EX28DRAFT_2372 at 2392.431 kb on + strand, within EX28DRAFT_2372 at 2392.493 kb on - strand at 2392.903 kb on + strand, within EX28DRAFT_2373 at 2392.943 kb on - strand, within EX28DRAFT_2373 at 2393.152 kb on + strand, within EX28DRAFT_2373 at 2393.153 kb on - strand, within EX28DRAFT_2373 at 2393.277 kb on - strand, within EX28DRAFT_2373 at 2393.468 kb on - strand, within EX28DRAFT_2373 at 2393.468 kb on - strand, within EX28DRAFT_2373 at 2393.468 kb on - strand, within EX28DRAFT_2373 at 2393.472 kb on - strand, within EX28DRAFT_2373 at 2393.472 kb on - strand, within EX28DRAFT_2373 at 2393.497 kb on + strand, within EX28DRAFT_2373 at 2393.548 kb on + strand, within EX28DRAFT_2373 at 2393.549 kb on - strand, within EX28DRAFT_2373 at 2393.915 kb on - strand, within EX28DRAFT_2373 at 2393.915 kb on - strand, within EX28DRAFT_2373 at 2394.158 kb on + strand at 2394.668 kb on + strand, within EX28DRAFT_2374 at 2394.690 kb on + strand, within EX28DRAFT_2374 at 2394.690 kb on + strand, within EX28DRAFT_2374 at 2394.690 kb on + strand, within EX28DRAFT_2374 at 2394.691 kb on - strand, within EX28DRAFT_2374 at 2395.037 kb on - strand, within EX28DRAFT_2374
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,391,677 + -0.3 2,391,978 + EX28DRAFT_2372 0.33 +0.3 2,391,979 - EX28DRAFT_2372 0.33 +0.4 2,391,979 - EX28DRAFT_2372 0.33 +0.3 2,391,979 - EX28DRAFT_2372 0.33 +0.0 2,392,057 + EX28DRAFT_2372 0.42 +1.3 2,392,098 + EX28DRAFT_2372 0.47 +1.6 2,392,100 + EX28DRAFT_2372 0.47 -0.1 2,392,101 - EX28DRAFT_2372 0.47 -0.6 2,392,339 + EX28DRAFT_2372 0.75 +0.3 2,392,431 + EX28DRAFT_2372 0.86 -0.2 2,392,493 - -0.3 2,392,903 + EX28DRAFT_2373 0.21 -0.1 2,392,943 - EX28DRAFT_2373 0.24 -0.5 2,393,152 + EX28DRAFT_2373 0.37 -0.7 2,393,153 - EX28DRAFT_2373 0.37 +0.5 2,393,277 - EX28DRAFT_2373 0.44 -0.7 2,393,468 - EX28DRAFT_2373 0.56 -2.9 2,393,468 - EX28DRAFT_2373 0.56 -0.2 2,393,468 - EX28DRAFT_2373 0.56 +0.2 2,393,472 - EX28DRAFT_2373 0.56 -0.3 2,393,472 - EX28DRAFT_2373 0.56 +0.9 2,393,497 + EX28DRAFT_2373 0.58 -0.4 2,393,548 + EX28DRAFT_2373 0.61 -0.3 2,393,549 - EX28DRAFT_2373 0.61 +0.7 2,393,915 - EX28DRAFT_2373 0.84 +0.3 2,393,915 - EX28DRAFT_2373 0.84 -0.1 2,394,158 + -0.3 2,394,668 + EX28DRAFT_2374 0.41 -0.2 2,394,690 + EX28DRAFT_2374 0.43 +0.0 2,394,690 + EX28DRAFT_2374 0.43 -0.5 2,394,690 + EX28DRAFT_2374 0.43 -0.1 2,394,691 - EX28DRAFT_2374 0.43 +0.5 2,395,037 - EX28DRAFT_2374 0.73 -0.1
Or see this region's nucleotide sequence