Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2326

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2324 and EX28DRAFT_2325 are separated by 1 nucleotidesEX28DRAFT_2325 and EX28DRAFT_2326 are separated by 149 nucleotidesEX28DRAFT_2326 and EX28DRAFT_2327 are separated by 3 nucleotidesEX28DRAFT_2327 and EX28DRAFT_2328 are separated by 28 nucleotides EX28DRAFT_2324: EX28DRAFT_2324 - DNA polymerase III, delta subunit (EC 2.7.7.7), at 2,349,246 to 2,350,280 _2324 EX28DRAFT_2325: EX28DRAFT_2325 - nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18), at 2,350,282 to 2,350,938 _2325 EX28DRAFT_2326: EX28DRAFT_2326 - ribosome silencing factor RsfS/YbeB/iojap, at 2,351,088 to 2,351,525 _2326 EX28DRAFT_2327: EX28DRAFT_2327 - rRNA large subunit m3Psi methyltransferase RlmH, at 2,351,529 to 2,351,996 _2327 EX28DRAFT_2328: EX28DRAFT_2328 - penicillin-binding protein 2, at 2,352,025 to 2,353,926 _2328 Position (kb) 2351 2352Strain fitness (log2 ratio) -1 0 1at 2350.949 kb on + strandat 2350.993 kb on + strandat 2350.994 kb on - strandat 2351.150 kb on + strand, within EX28DRAFT_2326at 2351.150 kb on + strand, within EX28DRAFT_2326at 2351.152 kb on + strand, within EX28DRAFT_2326at 2351.179 kb on + strand, within EX28DRAFT_2326at 2351.303 kb on + strand, within EX28DRAFT_2326at 2351.333 kb on + strand, within EX28DRAFT_2326

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,350,949 + -0.7
2,350,993 + -0.3
2,350,994 - -0.4
2,351,150 + EX28DRAFT_2326 0.14 +0.9
2,351,150 + EX28DRAFT_2326 0.14 +0.2
2,351,152 + EX28DRAFT_2326 0.15 -0.1
2,351,179 + EX28DRAFT_2326 0.21 +1.0
2,351,303 + EX28DRAFT_2326 0.49 -1.6
2,351,333 + EX28DRAFT_2326 0.56 +1.1

Or see this region's nucleotide sequence