Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2297 and EX28DRAFT_2298 are separated by 56 nucleotides EX28DRAFT_2298 and EX28DRAFT_2299 are separated by 8 nucleotides
EX28DRAFT_2297: EX28DRAFT_2297 - glucosamine-6-phosphate isomerase, at 2,326,770 to 2,327,570
_2297
EX28DRAFT_2298: EX28DRAFT_2298 - N-acetylglucosamine-6-phosphate deacetylase, at 2,327,627 to 2,328,775
_2298
EX28DRAFT_2299: EX28DRAFT_2299 - Transcriptional regulator/sugar kinase, at 2,328,784 to 2,330,004
_2299
Position (kb)
2327
2328
2329 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2326.628 kb on + strand at 2326.629 kb on - strand at 2326.629 kb on - strand at 2326.629 kb on - strand at 2326.705 kb on - strand at 2326.710 kb on + strand at 2326.710 kb on + strand at 2326.714 kb on + strand at 2326.715 kb on - strand at 2326.747 kb on + strand at 2326.748 kb on - strand at 2326.838 kb on + strand at 2326.937 kb on + strand, within EX28DRAFT_2297 at 2326.989 kb on + strand, within EX28DRAFT_2297 at 2326.989 kb on + strand, within EX28DRAFT_2297 at 2326.990 kb on - strand, within EX28DRAFT_2297 at 2327.022 kb on + strand, within EX28DRAFT_2297 at 2327.023 kb on - strand, within EX28DRAFT_2297 at 2327.023 kb on - strand, within EX28DRAFT_2297 at 2327.034 kb on - strand, within EX28DRAFT_2297 at 2327.131 kb on - strand, within EX28DRAFT_2297 at 2327.182 kb on + strand, within EX28DRAFT_2297 at 2327.183 kb on - strand, within EX28DRAFT_2297 at 2327.319 kb on + strand, within EX28DRAFT_2297 at 2327.435 kb on + strand, within EX28DRAFT_2297 at 2327.529 kb on + strand at 2327.568 kb on + strand at 2327.627 kb on - strand at 2327.627 kb on - strand at 2327.630 kb on + strand at 2327.630 kb on + strand at 2327.654 kb on + strand at 2327.776 kb on - strand, within EX28DRAFT_2298 at 2327.800 kb on - strand, within EX28DRAFT_2298 at 2327.800 kb on - strand, within EX28DRAFT_2298 at 2327.909 kb on + strand, within EX28DRAFT_2298 at 2327.909 kb on + strand, within EX28DRAFT_2298 at 2327.909 kb on + strand, within EX28DRAFT_2298 at 2327.910 kb on - strand, within EX28DRAFT_2298 at 2327.992 kb on + strand, within EX28DRAFT_2298 at 2328.065 kb on + strand, within EX28DRAFT_2298 at 2328.066 kb on - strand, within EX28DRAFT_2298 at 2328.073 kb on + strand, within EX28DRAFT_2298 at 2328.098 kb on + strand, within EX28DRAFT_2298 at 2328.098 kb on + strand, within EX28DRAFT_2298 at 2328.099 kb on - strand, within EX28DRAFT_2298 at 2328.293 kb on + strand, within EX28DRAFT_2298 at 2328.293 kb on + strand, within EX28DRAFT_2298 at 2328.350 kb on + strand, within EX28DRAFT_2298 at 2328.362 kb on - strand, within EX28DRAFT_2298 at 2328.375 kb on + strand, within EX28DRAFT_2298 at 2328.375 kb on + strand, within EX28DRAFT_2298 at 2328.376 kb on - strand, within EX28DRAFT_2298 at 2328.376 kb on - strand, within EX28DRAFT_2298 at 2328.376 kb on - strand, within EX28DRAFT_2298 at 2328.504 kb on - strand, within EX28DRAFT_2298 at 2328.692 kb on - strand at 2328.773 kb on + strand at 2328.773 kb on + strand at 2328.777 kb on + strand at 2328.777 kb on + strand at 2328.783 kb on + strand at 2328.837 kb on + strand at 2328.837 kb on + strand at 2328.837 kb on + strand at 2328.837 kb on + strand at 2328.837 kb on + strand at 2329.104 kb on + strand, within EX28DRAFT_2299 at 2329.104 kb on + strand, within EX28DRAFT_2299 at 2329.127 kb on - strand, within EX28DRAFT_2299 at 2329.177 kb on - strand, within EX28DRAFT_2299 at 2329.192 kb on - strand, within EX28DRAFT_2299 at 2329.285 kb on - strand, within EX28DRAFT_2299 at 2329.342 kb on - strand, within EX28DRAFT_2299 at 2329.397 kb on - strand, within EX28DRAFT_2299 at 2329.397 kb on - strand, within EX28DRAFT_2299 at 2329.465 kb on - strand, within EX28DRAFT_2299 at 2329.467 kb on + strand, within EX28DRAFT_2299 at 2329.468 kb on - strand, within EX28DRAFT_2299 at 2329.674 kb on - strand, within EX28DRAFT_2299 at 2329.736 kb on + strand, within EX28DRAFT_2299 at 2329.737 kb on - strand, within EX28DRAFT_2299
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,326,628 + +0.1 2,326,629 - +0.2 2,326,629 - -0.7 2,326,629 - +0.2 2,326,705 - +0.0 2,326,710 + +1.0 2,326,710 + -0.7 2,326,714 + +0.1 2,326,715 - -0.2 2,326,747 + -1.9 2,326,748 - +0.1 2,326,838 + -0.0 2,326,937 + EX28DRAFT_2297 0.21 +0.4 2,326,989 + EX28DRAFT_2297 0.27 -0.3 2,326,989 + EX28DRAFT_2297 0.27 -0.1 2,326,990 - EX28DRAFT_2297 0.27 +1.1 2,327,022 + EX28DRAFT_2297 0.31 +0.1 2,327,023 - EX28DRAFT_2297 0.32 +0.1 2,327,023 - EX28DRAFT_2297 0.32 -0.4 2,327,034 - EX28DRAFT_2297 0.33 +0.2 2,327,131 - EX28DRAFT_2297 0.45 +0.7 2,327,182 + EX28DRAFT_2297 0.51 -0.2 2,327,183 - EX28DRAFT_2297 0.52 -0.4 2,327,319 + EX28DRAFT_2297 0.69 -0.4 2,327,435 + EX28DRAFT_2297 0.83 -0.1 2,327,529 + -0.3 2,327,568 + +1.1 2,327,627 - +2.9 2,327,627 - +1.6 2,327,630 + +0.6 2,327,630 + +0.2 2,327,654 + +0.7 2,327,776 - EX28DRAFT_2298 0.13 +0.4 2,327,800 - EX28DRAFT_2298 0.15 +1.0 2,327,800 - EX28DRAFT_2298 0.15 +1.2 2,327,909 + EX28DRAFT_2298 0.25 +1.3 2,327,909 + EX28DRAFT_2298 0.25 +0.4 2,327,909 + EX28DRAFT_2298 0.25 +1.0 2,327,910 - EX28DRAFT_2298 0.25 +0.6 2,327,992 + EX28DRAFT_2298 0.32 -0.9 2,328,065 + EX28DRAFT_2298 0.38 +0.4 2,328,066 - EX28DRAFT_2298 0.38 +0.3 2,328,073 + EX28DRAFT_2298 0.39 +0.9 2,328,098 + EX28DRAFT_2298 0.41 +1.5 2,328,098 + EX28DRAFT_2298 0.41 +0.5 2,328,099 - EX28DRAFT_2298 0.41 +0.6 2,328,293 + EX28DRAFT_2298 0.58 +0.8 2,328,293 + EX28DRAFT_2298 0.58 +0.2 2,328,350 + EX28DRAFT_2298 0.63 +0.6 2,328,362 - EX28DRAFT_2298 0.64 +0.5 2,328,375 + EX28DRAFT_2298 0.65 +0.9 2,328,375 + EX28DRAFT_2298 0.65 +1.3 2,328,376 - EX28DRAFT_2298 0.65 -1.3 2,328,376 - EX28DRAFT_2298 0.65 +0.4 2,328,376 - EX28DRAFT_2298 0.65 +0.6 2,328,504 - EX28DRAFT_2298 0.76 +0.7 2,328,692 - +0.4 2,328,773 + +0.8 2,328,773 + +1.1 2,328,777 + +1.3 2,328,777 + +0.8 2,328,783 + +1.5 2,328,837 + +0.3 2,328,837 + +0.5 2,328,837 + +0.2 2,328,837 + +1.7 2,328,837 + +0.4 2,329,104 + EX28DRAFT_2299 0.26 +0.8 2,329,104 + EX28DRAFT_2299 0.26 +0.1 2,329,127 - EX28DRAFT_2299 0.28 +1.0 2,329,177 - EX28DRAFT_2299 0.32 -0.4 2,329,192 - EX28DRAFT_2299 0.33 +0.2 2,329,285 - EX28DRAFT_2299 0.41 +0.3 2,329,342 - EX28DRAFT_2299 0.46 +0.9 2,329,397 - EX28DRAFT_2299 0.50 +0.5 2,329,397 - EX28DRAFT_2299 0.50 +0.3 2,329,465 - EX28DRAFT_2299 0.56 +1.0 2,329,467 + EX28DRAFT_2299 0.56 +0.8 2,329,468 - EX28DRAFT_2299 0.56 +0.9 2,329,674 - EX28DRAFT_2299 0.73 +0.6 2,329,736 + EX28DRAFT_2299 0.78 +0.5 2,329,737 - EX28DRAFT_2299 0.78 +0.3
Or see this region's nucleotide sequence