Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2210 and EX28DRAFT_2211 are separated by 72 nucleotides EX28DRAFT_2211 and EX28DRAFT_2212 are separated by 752 nucleotides
EX28DRAFT_2210: EX28DRAFT_2210 - conserved hypothetical protein, cofD-related, at 2,232,138 to 2,233,046
_2210
EX28DRAFT_2211: EX28DRAFT_2211 - Excinuclease ABC subunit B, at 2,233,119 to 2,235,134
_2211
EX28DRAFT_2212: EX28DRAFT_2212 - ABC-type branched-chain amino acid transport systems, ATPase component, at 2,235,887 to 2,236,609
_2212
Position (kb)
2233
2234
2235
2236 Strain fitness (log2 ratio)
-2
-1
0
1 at 2232.133 kb on + strand at 2232.134 kb on - strand at 2232.134 kb on - strand at 2232.420 kb on - strand, within EX28DRAFT_2210 at 2232.464 kb on - strand, within EX28DRAFT_2210 at 2232.487 kb on + strand, within EX28DRAFT_2210 at 2232.717 kb on + strand, within EX28DRAFT_2210 at 2232.719 kb on + strand, within EX28DRAFT_2210 at 2232.745 kb on + strand, within EX28DRAFT_2210 at 2232.792 kb on + strand, within EX28DRAFT_2210 at 2232.862 kb on + strand, within EX28DRAFT_2210 at 2232.862 kb on + strand, within EX28DRAFT_2210 at 2232.863 kb on - strand, within EX28DRAFT_2210 at 2232.977 kb on + strand at 2232.981 kb on - strand at 2232.984 kb on + strand at 2233.155 kb on + strand at 2233.156 kb on - strand at 2233.156 kb on - strand at 2233.271 kb on + strand at 2233.271 kb on + strand at 2233.402 kb on + strand, within EX28DRAFT_2211 at 2233.940 kb on - strand, within EX28DRAFT_2211 at 2233.940 kb on - strand, within EX28DRAFT_2211 at 2233.963 kb on + strand, within EX28DRAFT_2211 at 2233.963 kb on + strand, within EX28DRAFT_2211 at 2233.964 kb on - strand, within EX28DRAFT_2211 at 2233.964 kb on - strand, within EX28DRAFT_2211 at 2234.153 kb on - strand, within EX28DRAFT_2211 at 2234.209 kb on + strand, within EX28DRAFT_2211 at 2234.230 kb on + strand, within EX28DRAFT_2211 at 2234.301 kb on - strand, within EX28DRAFT_2211 at 2234.301 kb on - strand, within EX28DRAFT_2211 at 2234.389 kb on + strand, within EX28DRAFT_2211 at 2234.390 kb on - strand, within EX28DRAFT_2211 at 2234.412 kb on - strand, within EX28DRAFT_2211 at 2234.593 kb on + strand, within EX28DRAFT_2211 at 2234.594 kb on - strand, within EX28DRAFT_2211 at 2234.594 kb on - strand, within EX28DRAFT_2211 at 2234.594 kb on - strand, within EX28DRAFT_2211 at 2234.698 kb on + strand, within EX28DRAFT_2211 at 2234.699 kb on - strand, within EX28DRAFT_2211 at 2234.830 kb on - strand, within EX28DRAFT_2211 at 2234.834 kb on - strand, within EX28DRAFT_2211 at 2234.834 kb on - strand, within EX28DRAFT_2211 at 2234.848 kb on + strand, within EX28DRAFT_2211 at 2234.857 kb on + strand, within EX28DRAFT_2211 at 2234.858 kb on - strand, within EX28DRAFT_2211 at 2234.861 kb on - strand, within EX28DRAFT_2211 at 2234.937 kb on - strand at 2235.155 kb on + strand at 2235.156 kb on - strand at 2235.245 kb on + strand at 2235.250 kb on + strand at 2235.250 kb on + strand at 2235.250 kb on + strand at 2235.266 kb on - strand at 2235.302 kb on + strand at 2235.303 kb on - strand at 2235.366 kb on + strand at 2235.373 kb on - strand at 2235.634 kb on + strand at 2235.863 kb on - strand at 2235.863 kb on - strand at 2235.931 kb on + strand at 2235.932 kb on - strand at 2235.932 kb on - strand at 2235.932 kb on - strand at 2235.932 kb on - strand at 2235.932 kb on - strand at 2235.937 kb on - strand at 2235.974 kb on - strand, within EX28DRAFT_2212
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,232,133 + -0.6 2,232,134 - +0.4 2,232,134 - -0.1 2,232,420 - EX28DRAFT_2210 0.31 +0.4 2,232,464 - EX28DRAFT_2210 0.36 +0.2 2,232,487 + EX28DRAFT_2210 0.38 -0.2 2,232,717 + EX28DRAFT_2210 0.64 -0.1 2,232,719 + EX28DRAFT_2210 0.64 -0.8 2,232,745 + EX28DRAFT_2210 0.67 -0.3 2,232,792 + EX28DRAFT_2210 0.72 -0.5 2,232,862 + EX28DRAFT_2210 0.80 +0.9 2,232,862 + EX28DRAFT_2210 0.80 -0.3 2,232,863 - EX28DRAFT_2210 0.80 +0.0 2,232,977 + +0.1 2,232,981 - -0.4 2,232,984 + -0.6 2,233,155 + -0.7 2,233,156 - +0.1 2,233,156 - -0.1 2,233,271 + -0.9 2,233,271 + +0.3 2,233,402 + EX28DRAFT_2211 0.14 -0.1 2,233,940 - EX28DRAFT_2211 0.41 -1.6 2,233,940 - EX28DRAFT_2211 0.41 -0.8 2,233,963 + EX28DRAFT_2211 0.42 -0.5 2,233,963 + EX28DRAFT_2211 0.42 +0.5 2,233,964 - EX28DRAFT_2211 0.42 -0.8 2,233,964 - EX28DRAFT_2211 0.42 -0.9 2,234,153 - EX28DRAFT_2211 0.51 -0.7 2,234,209 + EX28DRAFT_2211 0.54 -1.6 2,234,230 + EX28DRAFT_2211 0.55 -0.8 2,234,301 - EX28DRAFT_2211 0.59 -0.3 2,234,301 - EX28DRAFT_2211 0.59 -0.7 2,234,389 + EX28DRAFT_2211 0.63 -1.9 2,234,390 - EX28DRAFT_2211 0.63 -0.9 2,234,412 - EX28DRAFT_2211 0.64 -0.4 2,234,593 + EX28DRAFT_2211 0.73 -1.3 2,234,594 - EX28DRAFT_2211 0.73 -0.4 2,234,594 - EX28DRAFT_2211 0.73 -1.8 2,234,594 - EX28DRAFT_2211 0.73 -1.7 2,234,698 + EX28DRAFT_2211 0.78 +0.1 2,234,699 - EX28DRAFT_2211 0.78 -0.7 2,234,830 - EX28DRAFT_2211 0.85 -1.0 2,234,834 - EX28DRAFT_2211 0.85 -0.8 2,234,834 - EX28DRAFT_2211 0.85 -0.9 2,234,848 + EX28DRAFT_2211 0.86 -0.4 2,234,857 + EX28DRAFT_2211 0.86 -1.3 2,234,858 - EX28DRAFT_2211 0.86 -0.9 2,234,861 - EX28DRAFT_2211 0.86 -1.3 2,234,937 - -1.3 2,235,155 + -0.3 2,235,156 - -0.1 2,235,245 + +1.3 2,235,250 + +0.4 2,235,250 + -0.2 2,235,250 + -0.0 2,235,266 - -1.3 2,235,302 + +0.4 2,235,303 - +1.1 2,235,366 + -0.2 2,235,373 - +0.9 2,235,634 + +0.1 2,235,863 - +0.2 2,235,863 - +0.0 2,235,931 + +0.1 2,235,932 - +0.8 2,235,932 - -0.5 2,235,932 - -0.0 2,235,932 - -0.1 2,235,932 - -1.0 2,235,937 - +0.6 2,235,974 - EX28DRAFT_2212 0.12 +1.6
Or see this region's nucleotide sequence