Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2211

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2210 and EX28DRAFT_2211 are separated by 72 nucleotidesEX28DRAFT_2211 and EX28DRAFT_2212 are separated by 752 nucleotides EX28DRAFT_2210: EX28DRAFT_2210 - conserved hypothetical protein, cofD-related, at 2,232,138 to 2,233,046 _2210 EX28DRAFT_2211: EX28DRAFT_2211 - Excinuclease ABC subunit B, at 2,233,119 to 2,235,134 _2211 EX28DRAFT_2212: EX28DRAFT_2212 - ABC-type branched-chain amino acid transport systems, ATPase component, at 2,235,887 to 2,236,609 _2212 Position (kb) 2233 2234 2235 2236Strain fitness (log2 ratio) -2 -1 0 1at 2232.133 kb on + strandat 2232.134 kb on - strandat 2232.134 kb on - strandat 2232.420 kb on - strand, within EX28DRAFT_2210at 2232.464 kb on - strand, within EX28DRAFT_2210at 2232.487 kb on + strand, within EX28DRAFT_2210at 2232.717 kb on + strand, within EX28DRAFT_2210at 2232.719 kb on + strand, within EX28DRAFT_2210at 2232.745 kb on + strand, within EX28DRAFT_2210at 2232.792 kb on + strand, within EX28DRAFT_2210at 2232.862 kb on + strand, within EX28DRAFT_2210at 2232.862 kb on + strand, within EX28DRAFT_2210at 2232.863 kb on - strand, within EX28DRAFT_2210at 2232.977 kb on + strandat 2232.981 kb on - strandat 2232.984 kb on + strandat 2233.155 kb on + strandat 2233.156 kb on - strandat 2233.156 kb on - strandat 2233.271 kb on + strandat 2233.271 kb on + strandat 2233.402 kb on + strand, within EX28DRAFT_2211at 2233.940 kb on - strand, within EX28DRAFT_2211at 2233.940 kb on - strand, within EX28DRAFT_2211at 2233.963 kb on + strand, within EX28DRAFT_2211at 2233.963 kb on + strand, within EX28DRAFT_2211at 2233.964 kb on - strand, within EX28DRAFT_2211at 2233.964 kb on - strand, within EX28DRAFT_2211at 2234.153 kb on - strand, within EX28DRAFT_2211at 2234.209 kb on + strand, within EX28DRAFT_2211at 2234.230 kb on + strand, within EX28DRAFT_2211at 2234.301 kb on - strand, within EX28DRAFT_2211at 2234.301 kb on - strand, within EX28DRAFT_2211at 2234.389 kb on + strand, within EX28DRAFT_2211at 2234.390 kb on - strand, within EX28DRAFT_2211at 2234.412 kb on - strand, within EX28DRAFT_2211at 2234.593 kb on + strand, within EX28DRAFT_2211at 2234.594 kb on - strand, within EX28DRAFT_2211at 2234.594 kb on - strand, within EX28DRAFT_2211at 2234.594 kb on - strand, within EX28DRAFT_2211at 2234.698 kb on + strand, within EX28DRAFT_2211at 2234.699 kb on - strand, within EX28DRAFT_2211at 2234.830 kb on - strand, within EX28DRAFT_2211at 2234.834 kb on - strand, within EX28DRAFT_2211at 2234.834 kb on - strand, within EX28DRAFT_2211at 2234.848 kb on + strand, within EX28DRAFT_2211at 2234.857 kb on + strand, within EX28DRAFT_2211at 2234.858 kb on - strand, within EX28DRAFT_2211at 2234.861 kb on - strand, within EX28DRAFT_2211at 2234.937 kb on - strandat 2235.155 kb on + strandat 2235.156 kb on - strandat 2235.245 kb on + strandat 2235.250 kb on + strandat 2235.250 kb on + strandat 2235.250 kb on + strandat 2235.266 kb on - strandat 2235.302 kb on + strandat 2235.303 kb on - strandat 2235.366 kb on + strandat 2235.373 kb on - strandat 2235.634 kb on + strandat 2235.863 kb on - strandat 2235.863 kb on - strandat 2235.931 kb on + strandat 2235.932 kb on - strandat 2235.932 kb on - strandat 2235.932 kb on - strandat 2235.932 kb on - strandat 2235.932 kb on - strandat 2235.937 kb on - strandat 2235.974 kb on - strand, within EX28DRAFT_2212

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
2,232,133 + -0.6
2,232,134 - +0.4
2,232,134 - -0.1
2,232,420 - EX28DRAFT_2210 0.31 +0.4
2,232,464 - EX28DRAFT_2210 0.36 +0.2
2,232,487 + EX28DRAFT_2210 0.38 -0.2
2,232,717 + EX28DRAFT_2210 0.64 -0.1
2,232,719 + EX28DRAFT_2210 0.64 -0.8
2,232,745 + EX28DRAFT_2210 0.67 -0.3
2,232,792 + EX28DRAFT_2210 0.72 -0.5
2,232,862 + EX28DRAFT_2210 0.80 +0.9
2,232,862 + EX28DRAFT_2210 0.80 -0.3
2,232,863 - EX28DRAFT_2210 0.80 +0.0
2,232,977 + +0.1
2,232,981 - -0.4
2,232,984 + -0.6
2,233,155 + -0.7
2,233,156 - +0.1
2,233,156 - -0.1
2,233,271 + -0.9
2,233,271 + +0.3
2,233,402 + EX28DRAFT_2211 0.14 -0.1
2,233,940 - EX28DRAFT_2211 0.41 -1.6
2,233,940 - EX28DRAFT_2211 0.41 -0.8
2,233,963 + EX28DRAFT_2211 0.42 -0.5
2,233,963 + EX28DRAFT_2211 0.42 +0.5
2,233,964 - EX28DRAFT_2211 0.42 -0.8
2,233,964 - EX28DRAFT_2211 0.42 -0.9
2,234,153 - EX28DRAFT_2211 0.51 -0.7
2,234,209 + EX28DRAFT_2211 0.54 -1.6
2,234,230 + EX28DRAFT_2211 0.55 -0.8
2,234,301 - EX28DRAFT_2211 0.59 -0.3
2,234,301 - EX28DRAFT_2211 0.59 -0.7
2,234,389 + EX28DRAFT_2211 0.63 -1.9
2,234,390 - EX28DRAFT_2211 0.63 -0.9
2,234,412 - EX28DRAFT_2211 0.64 -0.4
2,234,593 + EX28DRAFT_2211 0.73 -1.3
2,234,594 - EX28DRAFT_2211 0.73 -0.4
2,234,594 - EX28DRAFT_2211 0.73 -1.8
2,234,594 - EX28DRAFT_2211 0.73 -1.7
2,234,698 + EX28DRAFT_2211 0.78 +0.1
2,234,699 - EX28DRAFT_2211 0.78 -0.7
2,234,830 - EX28DRAFT_2211 0.85 -1.0
2,234,834 - EX28DRAFT_2211 0.85 -0.8
2,234,834 - EX28DRAFT_2211 0.85 -0.9
2,234,848 + EX28DRAFT_2211 0.86 -0.4
2,234,857 + EX28DRAFT_2211 0.86 -1.3
2,234,858 - EX28DRAFT_2211 0.86 -0.9
2,234,861 - EX28DRAFT_2211 0.86 -1.3
2,234,937 - -1.3
2,235,155 + -0.3
2,235,156 - -0.1
2,235,245 + +1.3
2,235,250 + +0.4
2,235,250 + -0.2
2,235,250 + -0.0
2,235,266 - -1.3
2,235,302 + +0.4
2,235,303 - +1.1
2,235,366 + -0.2
2,235,373 - +0.9
2,235,634 + +0.1
2,235,863 - +0.2
2,235,863 - +0.0
2,235,931 + +0.1
2,235,932 - +0.8
2,235,932 - -0.5
2,235,932 - -0.0
2,235,932 - -0.1
2,235,932 - -1.0
2,235,937 - +0.6
2,235,974 - EX28DRAFT_2212 0.12 +1.6

Or see this region's nucleotide sequence