Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2176 and EX28DRAFT_2177 are separated by 326 nucleotides EX28DRAFT_2177 and EX28DRAFT_2178 are separated by 116 nucleotides EX28DRAFT_2178 and EX28DRAFT_2179 are separated by 310 nucleotides
EX28DRAFT_2176: EX28DRAFT_2176 - hypothetical protein, at 2,199,425 to 2,200,156
_2176
EX28DRAFT_2177: EX28DRAFT_2177 - Bacterial PH domain/Short C-terminal domain, at 2,200,483 to 2,200,983
_2177
EX28DRAFT_2178: EX28DRAFT_2178 - hypothetical protein, at 2,201,100 to 2,201,282
_2178
EX28DRAFT_2179: EX28DRAFT_2179 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 2,201,593 to 2,202,336
_2179
Position (kb)
2201
2202 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2200.109 kb on - strand at 2200.109 kb on - strand at 2200.127 kb on - strand at 2200.221 kb on - strand at 2200.221 kb on - strand at 2200.231 kb on + strand at 2200.232 kb on - strand at 2200.361 kb on - strand at 2200.409 kb on + strand at 2200.409 kb on + strand at 2200.409 kb on + strand at 2200.410 kb on - strand at 2200.468 kb on - strand at 2200.495 kb on - strand at 2200.591 kb on - strand, within EX28DRAFT_2177 at 2200.646 kb on - strand, within EX28DRAFT_2177 at 2200.646 kb on - strand, within EX28DRAFT_2177 at 2200.650 kb on + strand, within EX28DRAFT_2177 at 2200.749 kb on + strand, within EX28DRAFT_2177 at 2200.750 kb on - strand, within EX28DRAFT_2177 at 2200.885 kb on + strand, within EX28DRAFT_2177 at 2200.967 kb on + strand at 2200.968 kb on - strand at 2201.061 kb on - strand at 2201.111 kb on + strand at 2201.182 kb on + strand, within EX28DRAFT_2178 at 2201.182 kb on + strand, within EX28DRAFT_2178 at 2201.182 kb on + strand, within EX28DRAFT_2178 at 2201.182 kb on + strand, within EX28DRAFT_2178 at 2201.183 kb on - strand, within EX28DRAFT_2178 at 2201.188 kb on + strand, within EX28DRAFT_2178 at 2201.284 kb on + strand at 2201.284 kb on + strand at 2201.284 kb on + strand at 2201.284 kb on + strand at 2201.285 kb on - strand at 2201.331 kb on + strand at 2201.332 kb on - strand at 2201.392 kb on + strand at 2201.392 kb on + strand at 2201.393 kb on - strand at 2201.393 kb on - strand at 2201.472 kb on - strand at 2201.579 kb on + strand at 2201.592 kb on + strand at 2201.592 kb on + strand at 2201.592 kb on + strand at 2201.593 kb on - strand at 2201.606 kb on + strand at 2201.607 kb on - strand at 2201.628 kb on + strand at 2201.629 kb on - strand at 2201.629 kb on - strand at 2201.721 kb on + strand, within EX28DRAFT_2179 at 2201.721 kb on + strand, within EX28DRAFT_2179 at 2201.722 kb on - strand, within EX28DRAFT_2179 at 2201.725 kb on + strand, within EX28DRAFT_2179 at 2201.725 kb on + strand, within EX28DRAFT_2179 at 2201.725 kb on + strand, within EX28DRAFT_2179 at 2201.726 kb on - strand, within EX28DRAFT_2179 at 2201.726 kb on - strand, within EX28DRAFT_2179 at 2201.726 kb on - strand, within EX28DRAFT_2179 at 2201.782 kb on + strand, within EX28DRAFT_2179 at 2201.782 kb on + strand, within EX28DRAFT_2179 at 2201.783 kb on - strand, within EX28DRAFT_2179 at 2201.833 kb on - strand, within EX28DRAFT_2179 at 2201.950 kb on - strand, within EX28DRAFT_2179 at 2202.037 kb on - strand, within EX28DRAFT_2179 at 2202.037 kb on - strand, within EX28DRAFT_2179 at 2202.082 kb on + strand, within EX28DRAFT_2179 at 2202.082 kb on + strand, within EX28DRAFT_2179 at 2202.083 kb on - strand, within EX28DRAFT_2179 at 2202.142 kb on + strand, within EX28DRAFT_2179 at 2202.209 kb on - strand, within EX28DRAFT_2179
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,200,109 - -0.4 2,200,109 - -0.4 2,200,127 - -0.0 2,200,221 - -0.4 2,200,221 - +0.4 2,200,231 + -0.7 2,200,232 - +0.2 2,200,361 - +0.6 2,200,409 + -0.3 2,200,409 + -0.5 2,200,409 + +0.3 2,200,410 - -0.5 2,200,468 - +0.2 2,200,495 - -0.0 2,200,591 - EX28DRAFT_2177 0.22 +0.9 2,200,646 - EX28DRAFT_2177 0.33 -0.4 2,200,646 - EX28DRAFT_2177 0.33 +0.3 2,200,650 + EX28DRAFT_2177 0.33 -0.4 2,200,749 + EX28DRAFT_2177 0.53 -2.0 2,200,750 - EX28DRAFT_2177 0.53 -0.1 2,200,885 + EX28DRAFT_2177 0.80 -0.3 2,200,967 + -0.2 2,200,968 - -0.1 2,201,061 - -0.5 2,201,111 + +0.4 2,201,182 + EX28DRAFT_2178 0.45 +0.1 2,201,182 + EX28DRAFT_2178 0.45 -0.2 2,201,182 + EX28DRAFT_2178 0.45 +0.8 2,201,182 + EX28DRAFT_2178 0.45 +0.3 2,201,183 - EX28DRAFT_2178 0.45 +1.9 2,201,188 + EX28DRAFT_2178 0.48 +0.2 2,201,284 + +1.2 2,201,284 + -0.2 2,201,284 + -0.0 2,201,284 + +0.3 2,201,285 - +1.6 2,201,331 + +0.4 2,201,332 - +0.4 2,201,392 + +0.2 2,201,392 + +0.7 2,201,393 - +0.5 2,201,393 - +0.4 2,201,472 - -0.1 2,201,579 + -0.2 2,201,592 + +2.0 2,201,592 + +0.0 2,201,592 + +0.0 2,201,593 - +0.8 2,201,606 + -0.1 2,201,607 - -0.0 2,201,628 + +2.1 2,201,629 - +0.0 2,201,629 - +0.1 2,201,721 + EX28DRAFT_2179 0.17 -0.7 2,201,721 + EX28DRAFT_2179 0.17 +0.3 2,201,722 - EX28DRAFT_2179 0.17 +0.9 2,201,725 + EX28DRAFT_2179 0.18 +0.4 2,201,725 + EX28DRAFT_2179 0.18 +0.3 2,201,725 + EX28DRAFT_2179 0.18 -0.4 2,201,726 - EX28DRAFT_2179 0.18 -0.7 2,201,726 - EX28DRAFT_2179 0.18 -0.0 2,201,726 - EX28DRAFT_2179 0.18 +0.9 2,201,782 + EX28DRAFT_2179 0.25 +0.0 2,201,782 + EX28DRAFT_2179 0.25 -0.9 2,201,783 - EX28DRAFT_2179 0.26 -1.3 2,201,833 - EX28DRAFT_2179 0.32 +1.9 2,201,950 - EX28DRAFT_2179 0.48 -0.0 2,202,037 - EX28DRAFT_2179 0.60 +1.5 2,202,037 - EX28DRAFT_2179 0.60 -0.5 2,202,082 + EX28DRAFT_2179 0.66 +0.1 2,202,082 + EX28DRAFT_2179 0.66 -0.6 2,202,083 - EX28DRAFT_2179 0.66 -0.0 2,202,142 + EX28DRAFT_2179 0.74 +0.8 2,202,209 - EX28DRAFT_2179 0.83 -0.4
Or see this region's nucleotide sequence