Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2118

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2117 and EX28DRAFT_2118 are separated by 12 nucleotidesEX28DRAFT_2118 and EX28DRAFT_2119 are separated by 118 nucleotidesEX28DRAFT_2119 and EX28DRAFT_2120 overlap by 4 nucleotides EX28DRAFT_2117: EX28DRAFT_2117 - arsenite/antimonite efflux pump membrane protein, at 2,136,454 to 2,137,743 _2117 EX28DRAFT_2118: EX28DRAFT_2118 - arsenate reductase (glutaredoxin), at 2,137,756 to 2,138,187 _2118 EX28DRAFT_2119: EX28DRAFT_2119 - Short-chain alcohol dehydrogenase of unknown specificity, at 2,138,306 to 2,139,076 _2119 EX28DRAFT_2120: EX28DRAFT_2120 - transcriptional regulator, TetR family, at 2,139,073 to 2,139,624 _2120 Position (kb) 2137 2138 2139Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2136.888 kb on + strand, within EX28DRAFT_2117at 2136.957 kb on + strand, within EX28DRAFT_2117at 2136.958 kb on - strand, within EX28DRAFT_2117at 2136.958 kb on - strand, within EX28DRAFT_2117at 2136.976 kb on + strand, within EX28DRAFT_2117at 2137.303 kb on - strand, within EX28DRAFT_2117at 2137.303 kb on - strand, within EX28DRAFT_2117at 2137.321 kb on + strand, within EX28DRAFT_2117at 2137.321 kb on + strand, within EX28DRAFT_2117at 2137.321 kb on + strand, within EX28DRAFT_2117at 2137.321 kb on + strand, within EX28DRAFT_2117at 2137.321 kb on + strand, within EX28DRAFT_2117at 2137.322 kb on - strand, within EX28DRAFT_2117at 2137.322 kb on - strand, within EX28DRAFT_2117at 2137.333 kb on + strand, within EX28DRAFT_2117at 2137.333 kb on + strand, within EX28DRAFT_2117at 2137.334 kb on - strand, within EX28DRAFT_2117at 2137.465 kb on - strand, within EX28DRAFT_2117at 2137.465 kb on - strand, within EX28DRAFT_2117at 2137.465 kb on - strand, within EX28DRAFT_2117at 2137.465 kb on - strand, within EX28DRAFT_2117at 2137.541 kb on - strand, within EX28DRAFT_2117at 2137.655 kb on - strandat 2137.658 kb on - strandat 2137.721 kb on + strandat 2137.742 kb on - strandat 2137.742 kb on - strandat 2137.742 kb on - strandat 2137.756 kb on - strandat 2137.775 kb on - strandat 2137.998 kb on + strand, within EX28DRAFT_2118at 2138.007 kb on + strand, within EX28DRAFT_2118at 2138.226 kb on - strandat 2138.269 kb on + strandat 2138.269 kb on + strandat 2138.270 kb on - strandat 2138.270 kb on - strandat 2138.270 kb on - strandat 2138.270 kb on - strandat 2138.282 kb on + strandat 2138.532 kb on + strand, within EX28DRAFT_2119at 2138.536 kb on + strand, within EX28DRAFT_2119at 2138.537 kb on - strand, within EX28DRAFT_2119at 2138.537 kb on - strand, within EX28DRAFT_2119at 2138.537 kb on - strand, within EX28DRAFT_2119at 2138.560 kb on + strand, within EX28DRAFT_2119at 2138.697 kb on + strand, within EX28DRAFT_2119at 2138.697 kb on + strand, within EX28DRAFT_2119at 2138.697 kb on + strand, within EX28DRAFT_2119at 2138.697 kb on + strand, within EX28DRAFT_2119at 2138.698 kb on - strand, within EX28DRAFT_2119at 2138.698 kb on - strand, within EX28DRAFT_2119at 2138.701 kb on + strand, within EX28DRAFT_2119at 2138.701 kb on + strand, within EX28DRAFT_2119at 2138.701 kb on + strand, within EX28DRAFT_2119at 2138.809 kb on + strand, within EX28DRAFT_2119at 2138.876 kb on + strand, within EX28DRAFT_2119at 2138.876 kb on + strand, within EX28DRAFT_2119at 2138.877 kb on - strand, within EX28DRAFT_2119at 2139.005 kb on - strandat 2139.005 kb on - strandat 2139.055 kb on + strandat 2139.152 kb on + strand, within EX28DRAFT_2120at 2139.153 kb on - strand, within EX28DRAFT_2120at 2139.153 kb on - strand, within EX28DRAFT_2120at 2139.153 kb on - strand, within EX28DRAFT_2120

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,136,888 + EX28DRAFT_2117 0.34 -3.7
2,136,957 + EX28DRAFT_2117 0.39 -3.9
2,136,958 - EX28DRAFT_2117 0.39 -2.2
2,136,958 - EX28DRAFT_2117 0.39 -4.2
2,136,976 + EX28DRAFT_2117 0.40 -4.0
2,137,303 - EX28DRAFT_2117 0.66 -0.8
2,137,303 - EX28DRAFT_2117 0.66 -3.6
2,137,321 + EX28DRAFT_2117 0.67 -3.9
2,137,321 + EX28DRAFT_2117 0.67 -4.6
2,137,321 + EX28DRAFT_2117 0.67 -3.2
2,137,321 + EX28DRAFT_2117 0.67 -4.5
2,137,321 + EX28DRAFT_2117 0.67 -0.9
2,137,322 - EX28DRAFT_2117 0.67 -4.5
2,137,322 - EX28DRAFT_2117 0.67 -3.9
2,137,333 + EX28DRAFT_2117 0.68 -4.6
2,137,333 + EX28DRAFT_2117 0.68 -3.5
2,137,334 - EX28DRAFT_2117 0.68 -4.2
2,137,465 - EX28DRAFT_2117 0.78 -2.3
2,137,465 - EX28DRAFT_2117 0.78 -0.6
2,137,465 - EX28DRAFT_2117 0.78 -2.4
2,137,465 - EX28DRAFT_2117 0.78 -2.7
2,137,541 - EX28DRAFT_2117 0.84 -1.8
2,137,655 - -1.9
2,137,658 - -2.6
2,137,721 + -2.9
2,137,742 - -1.4
2,137,742 - -4.0
2,137,742 - -5.4
2,137,756 - -3.4
2,137,775 - -3.8
2,137,998 + EX28DRAFT_2118 0.56 -3.2
2,138,007 + EX28DRAFT_2118 0.58 -3.5
2,138,226 - -0.2
2,138,269 + -1.0
2,138,269 + -1.1
2,138,270 - -0.7
2,138,270 - -1.5
2,138,270 - -1.2
2,138,270 - -1.4
2,138,282 + +0.2
2,138,532 + EX28DRAFT_2119 0.29 -0.2
2,138,536 + EX28DRAFT_2119 0.30 -1.0
2,138,537 - EX28DRAFT_2119 0.30 -0.3
2,138,537 - EX28DRAFT_2119 0.30 +0.7
2,138,537 - EX28DRAFT_2119 0.30 -0.1
2,138,560 + EX28DRAFT_2119 0.33 -0.2
2,138,697 + EX28DRAFT_2119 0.51 -1.2
2,138,697 + EX28DRAFT_2119 0.51 +0.5
2,138,697 + EX28DRAFT_2119 0.51 +0.3
2,138,697 + EX28DRAFT_2119 0.51 -0.4
2,138,698 - EX28DRAFT_2119 0.51 -0.1
2,138,698 - EX28DRAFT_2119 0.51 -0.4
2,138,701 + EX28DRAFT_2119 0.51 -0.4
2,138,701 + EX28DRAFT_2119 0.51 -0.4
2,138,701 + EX28DRAFT_2119 0.51 +0.4
2,138,809 + EX28DRAFT_2119 0.65 -0.8
2,138,876 + EX28DRAFT_2119 0.74 -0.7
2,138,876 + EX28DRAFT_2119 0.74 +0.5
2,138,877 - EX28DRAFT_2119 0.74 -0.4
2,139,005 - -2.2
2,139,005 - +0.2
2,139,055 + -1.0
2,139,152 + EX28DRAFT_2120 0.14 +0.6
2,139,153 - EX28DRAFT_2120 0.14 -0.0
2,139,153 - EX28DRAFT_2120 0.14 +0.6
2,139,153 - EX28DRAFT_2120 0.14 -0.0

Or see this region's nucleotide sequence