Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2117 and EX28DRAFT_2118 are separated by 12 nucleotides EX28DRAFT_2118 and EX28DRAFT_2119 are separated by 118 nucleotides EX28DRAFT_2119 and EX28DRAFT_2120 overlap by 4 nucleotides
EX28DRAFT_2117: EX28DRAFT_2117 - arsenite/antimonite efflux pump membrane protein, at 2,136,454 to 2,137,743
_2117
EX28DRAFT_2118: EX28DRAFT_2118 - arsenate reductase (glutaredoxin), at 2,137,756 to 2,138,187
_2118
EX28DRAFT_2119: EX28DRAFT_2119 - Short-chain alcohol dehydrogenase of unknown specificity, at 2,138,306 to 2,139,076
_2119
EX28DRAFT_2120: EX28DRAFT_2120 - transcriptional regulator, TetR family, at 2,139,073 to 2,139,624
_2120
Position (kb)
2137
2138
2139 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2136.888 kb on + strand, within EX28DRAFT_2117 at 2136.957 kb on + strand, within EX28DRAFT_2117 at 2136.958 kb on - strand, within EX28DRAFT_2117 at 2136.958 kb on - strand, within EX28DRAFT_2117 at 2136.976 kb on + strand, within EX28DRAFT_2117 at 2137.303 kb on - strand, within EX28DRAFT_2117 at 2137.303 kb on - strand, within EX28DRAFT_2117 at 2137.321 kb on + strand, within EX28DRAFT_2117 at 2137.321 kb on + strand, within EX28DRAFT_2117 at 2137.321 kb on + strand, within EX28DRAFT_2117 at 2137.321 kb on + strand, within EX28DRAFT_2117 at 2137.321 kb on + strand, within EX28DRAFT_2117 at 2137.322 kb on - strand, within EX28DRAFT_2117 at 2137.322 kb on - strand, within EX28DRAFT_2117 at 2137.333 kb on + strand, within EX28DRAFT_2117 at 2137.333 kb on + strand, within EX28DRAFT_2117 at 2137.334 kb on - strand, within EX28DRAFT_2117 at 2137.465 kb on - strand, within EX28DRAFT_2117 at 2137.465 kb on - strand, within EX28DRAFT_2117 at 2137.465 kb on - strand, within EX28DRAFT_2117 at 2137.465 kb on - strand, within EX28DRAFT_2117 at 2137.541 kb on - strand, within EX28DRAFT_2117 at 2137.655 kb on - strand at 2137.658 kb on - strand at 2137.721 kb on + strand at 2137.742 kb on - strand at 2137.742 kb on - strand at 2137.742 kb on - strand at 2137.756 kb on - strand at 2137.775 kb on - strand at 2137.998 kb on + strand, within EX28DRAFT_2118 at 2138.007 kb on + strand, within EX28DRAFT_2118 at 2138.226 kb on - strand at 2138.269 kb on + strand at 2138.269 kb on + strand at 2138.270 kb on - strand at 2138.270 kb on - strand at 2138.270 kb on - strand at 2138.270 kb on - strand at 2138.282 kb on + strand at 2138.532 kb on + strand, within EX28DRAFT_2119 at 2138.536 kb on + strand, within EX28DRAFT_2119 at 2138.537 kb on - strand, within EX28DRAFT_2119 at 2138.537 kb on - strand, within EX28DRAFT_2119 at 2138.537 kb on - strand, within EX28DRAFT_2119 at 2138.560 kb on + strand, within EX28DRAFT_2119 at 2138.697 kb on + strand, within EX28DRAFT_2119 at 2138.697 kb on + strand, within EX28DRAFT_2119 at 2138.697 kb on + strand, within EX28DRAFT_2119 at 2138.697 kb on + strand, within EX28DRAFT_2119 at 2138.698 kb on - strand, within EX28DRAFT_2119 at 2138.698 kb on - strand, within EX28DRAFT_2119 at 2138.701 kb on + strand, within EX28DRAFT_2119 at 2138.701 kb on + strand, within EX28DRAFT_2119 at 2138.701 kb on + strand, within EX28DRAFT_2119 at 2138.809 kb on + strand, within EX28DRAFT_2119 at 2138.876 kb on + strand, within EX28DRAFT_2119 at 2138.876 kb on + strand, within EX28DRAFT_2119 at 2138.877 kb on - strand, within EX28DRAFT_2119 at 2139.005 kb on - strand at 2139.005 kb on - strand at 2139.055 kb on + strand at 2139.152 kb on + strand, within EX28DRAFT_2120 at 2139.153 kb on - strand, within EX28DRAFT_2120 at 2139.153 kb on - strand, within EX28DRAFT_2120 at 2139.153 kb on - strand, within EX28DRAFT_2120
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,136,888 + EX28DRAFT_2117 0.34 -3.7 2,136,957 + EX28DRAFT_2117 0.39 -3.9 2,136,958 - EX28DRAFT_2117 0.39 -2.2 2,136,958 - EX28DRAFT_2117 0.39 -4.2 2,136,976 + EX28DRAFT_2117 0.40 -4.0 2,137,303 - EX28DRAFT_2117 0.66 -0.8 2,137,303 - EX28DRAFT_2117 0.66 -3.6 2,137,321 + EX28DRAFT_2117 0.67 -3.9 2,137,321 + EX28DRAFT_2117 0.67 -4.6 2,137,321 + EX28DRAFT_2117 0.67 -3.2 2,137,321 + EX28DRAFT_2117 0.67 -4.5 2,137,321 + EX28DRAFT_2117 0.67 -0.9 2,137,322 - EX28DRAFT_2117 0.67 -4.5 2,137,322 - EX28DRAFT_2117 0.67 -3.9 2,137,333 + EX28DRAFT_2117 0.68 -4.6 2,137,333 + EX28DRAFT_2117 0.68 -3.5 2,137,334 - EX28DRAFT_2117 0.68 -4.2 2,137,465 - EX28DRAFT_2117 0.78 -2.3 2,137,465 - EX28DRAFT_2117 0.78 -0.6 2,137,465 - EX28DRAFT_2117 0.78 -2.4 2,137,465 - EX28DRAFT_2117 0.78 -2.7 2,137,541 - EX28DRAFT_2117 0.84 -1.8 2,137,655 - -1.9 2,137,658 - -2.6 2,137,721 + -2.9 2,137,742 - -1.4 2,137,742 - -4.0 2,137,742 - -5.4 2,137,756 - -3.4 2,137,775 - -3.8 2,137,998 + EX28DRAFT_2118 0.56 -3.2 2,138,007 + EX28DRAFT_2118 0.58 -3.5 2,138,226 - -0.2 2,138,269 + -1.0 2,138,269 + -1.1 2,138,270 - -0.7 2,138,270 - -1.5 2,138,270 - -1.2 2,138,270 - -1.4 2,138,282 + +0.2 2,138,532 + EX28DRAFT_2119 0.29 -0.2 2,138,536 + EX28DRAFT_2119 0.30 -1.0 2,138,537 - EX28DRAFT_2119 0.30 -0.3 2,138,537 - EX28DRAFT_2119 0.30 +0.7 2,138,537 - EX28DRAFT_2119 0.30 -0.1 2,138,560 + EX28DRAFT_2119 0.33 -0.2 2,138,697 + EX28DRAFT_2119 0.51 -1.2 2,138,697 + EX28DRAFT_2119 0.51 +0.5 2,138,697 + EX28DRAFT_2119 0.51 +0.3 2,138,697 + EX28DRAFT_2119 0.51 -0.4 2,138,698 - EX28DRAFT_2119 0.51 -0.1 2,138,698 - EX28DRAFT_2119 0.51 -0.4 2,138,701 + EX28DRAFT_2119 0.51 -0.4 2,138,701 + EX28DRAFT_2119 0.51 -0.4 2,138,701 + EX28DRAFT_2119 0.51 +0.4 2,138,809 + EX28DRAFT_2119 0.65 -0.8 2,138,876 + EX28DRAFT_2119 0.74 -0.7 2,138,876 + EX28DRAFT_2119 0.74 +0.5 2,138,877 - EX28DRAFT_2119 0.74 -0.4 2,139,005 - -2.2 2,139,005 - +0.2 2,139,055 + -1.0 2,139,152 + EX28DRAFT_2120 0.14 +0.6 2,139,153 - EX28DRAFT_2120 0.14 -0.0 2,139,153 - EX28DRAFT_2120 0.14 +0.6 2,139,153 - EX28DRAFT_2120 0.14 -0.0
Or see this region's nucleotide sequence