Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2115 and EX28DRAFT_2116 are separated by 231 nucleotides EX28DRAFT_2116 and EX28DRAFT_2117 are separated by 40 nucleotides EX28DRAFT_2117 and EX28DRAFT_2118 are separated by 12 nucleotides EX28DRAFT_2118 and EX28DRAFT_2119 are separated by 118 nucleotides
EX28DRAFT_2115: EX28DRAFT_2115 - hypothetical protein, at 2,135,463 to 2,135,861
_2115
EX28DRAFT_2116: EX28DRAFT_2116 - Predicted transcriptional regulators, at 2,136,093 to 2,136,413
_2116
EX28DRAFT_2117: EX28DRAFT_2117 - arsenite/antimonite efflux pump membrane protein, at 2,136,454 to 2,137,743
_2117
EX28DRAFT_2118: EX28DRAFT_2118 - arsenate reductase (glutaredoxin), at 2,137,756 to 2,138,187
_2118
EX28DRAFT_2119: EX28DRAFT_2119 - Short-chain alcohol dehydrogenase of unknown specificity, at 2,138,306 to 2,139,076
_2119
Position (kb)
2136
2137
2138 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2135.668 kb on + strand, within EX28DRAFT_2115 at 2135.726 kb on + strand, within EX28DRAFT_2115 at 2135.809 kb on - strand, within EX28DRAFT_2115 at 2135.811 kb on - strand, within EX28DRAFT_2115 at 2135.822 kb on + strand at 2135.822 kb on + strand at 2135.868 kb on + strand at 2135.869 kb on - strand at 2135.939 kb on - strand at 2135.979 kb on - strand at 2135.979 kb on - strand at 2135.982 kb on + strand at 2135.983 kb on - strand at 2136.006 kb on + strand at 2136.024 kb on + strand at 2136.024 kb on + strand at 2136.049 kb on + strand at 2136.387 kb on - strand at 2136.439 kb on - strand at 2136.440 kb on + strand at 2136.440 kb on + strand at 2136.441 kb on - strand at 2136.588 kb on + strand, within EX28DRAFT_2117 at 2136.590 kb on + strand, within EX28DRAFT_2117 at 2136.590 kb on + strand, within EX28DRAFT_2117 at 2136.606 kb on + strand, within EX28DRAFT_2117 at 2136.650 kb on + strand, within EX28DRAFT_2117 at 2136.650 kb on + strand, within EX28DRAFT_2117 at 2136.651 kb on - strand, within EX28DRAFT_2117 at 2136.738 kb on + strand, within EX28DRAFT_2117 at 2136.738 kb on + strand, within EX28DRAFT_2117 at 2136.739 kb on - strand, within EX28DRAFT_2117 at 2136.742 kb on + strand, within EX28DRAFT_2117 at 2136.742 kb on + strand, within EX28DRAFT_2117 at 2136.743 kb on - strand, within EX28DRAFT_2117 at 2136.745 kb on - strand, within EX28DRAFT_2117 at 2136.745 kb on - strand, within EX28DRAFT_2117 at 2136.888 kb on + strand, within EX28DRAFT_2117 at 2136.957 kb on + strand, within EX28DRAFT_2117 at 2136.958 kb on - strand, within EX28DRAFT_2117 at 2136.958 kb on - strand, within EX28DRAFT_2117 at 2136.976 kb on + strand, within EX28DRAFT_2117 at 2137.303 kb on - strand, within EX28DRAFT_2117 at 2137.303 kb on - strand, within EX28DRAFT_2117 at 2137.321 kb on + strand, within EX28DRAFT_2117 at 2137.321 kb on + strand, within EX28DRAFT_2117 at 2137.321 kb on + strand, within EX28DRAFT_2117 at 2137.321 kb on + strand, within EX28DRAFT_2117 at 2137.321 kb on + strand, within EX28DRAFT_2117 at 2137.322 kb on - strand, within EX28DRAFT_2117 at 2137.322 kb on - strand, within EX28DRAFT_2117 at 2137.333 kb on + strand, within EX28DRAFT_2117 at 2137.333 kb on + strand, within EX28DRAFT_2117 at 2137.334 kb on - strand, within EX28DRAFT_2117 at 2137.465 kb on - strand, within EX28DRAFT_2117 at 2137.465 kb on - strand, within EX28DRAFT_2117 at 2137.465 kb on - strand, within EX28DRAFT_2117 at 2137.465 kb on - strand, within EX28DRAFT_2117 at 2137.541 kb on - strand, within EX28DRAFT_2117 at 2137.655 kb on - strand at 2137.658 kb on - strand at 2137.721 kb on + strand at 2137.742 kb on - strand at 2137.742 kb on - strand at 2137.742 kb on - strand at 2137.756 kb on - strand at 2137.775 kb on - strand at 2137.998 kb on + strand, within EX28DRAFT_2118 at 2138.007 kb on + strand, within EX28DRAFT_2118 at 2138.226 kb on - strand at 2138.269 kb on + strand at 2138.269 kb on + strand at 2138.270 kb on - strand at 2138.270 kb on - strand at 2138.270 kb on - strand at 2138.270 kb on - strand at 2138.282 kb on + strand at 2138.532 kb on + strand, within EX28DRAFT_2119 at 2138.536 kb on + strand, within EX28DRAFT_2119 at 2138.537 kb on - strand, within EX28DRAFT_2119 at 2138.537 kb on - strand, within EX28DRAFT_2119 at 2138.537 kb on - strand, within EX28DRAFT_2119 at 2138.560 kb on + strand, within EX28DRAFT_2119 at 2138.697 kb on + strand, within EX28DRAFT_2119 at 2138.697 kb on + strand, within EX28DRAFT_2119 at 2138.697 kb on + strand, within EX28DRAFT_2119 at 2138.697 kb on + strand, within EX28DRAFT_2119 at 2138.698 kb on - strand, within EX28DRAFT_2119 at 2138.698 kb on - strand, within EX28DRAFT_2119 at 2138.701 kb on + strand, within EX28DRAFT_2119 at 2138.701 kb on + strand, within EX28DRAFT_2119 at 2138.701 kb on + strand, within EX28DRAFT_2119
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,135,668 + EX28DRAFT_2115 0.51 -0.7 2,135,726 + EX28DRAFT_2115 0.66 +0.2 2,135,809 - EX28DRAFT_2115 0.87 +0.4 2,135,811 - EX28DRAFT_2115 0.87 -1.6 2,135,822 + +1.4 2,135,822 + +0.2 2,135,868 + +0.5 2,135,869 - +0.8 2,135,939 - +1.6 2,135,979 - +1.5 2,135,979 - +1.1 2,135,982 + +2.5 2,135,983 - +1.9 2,136,006 + +1.0 2,136,024 + +0.0 2,136,024 + -0.0 2,136,049 + -0.2 2,136,387 - -4.2 2,136,439 - -3.0 2,136,440 + -1.2 2,136,440 + -0.7 2,136,441 - -2.9 2,136,588 + EX28DRAFT_2117 0.10 -3.0 2,136,590 + EX28DRAFT_2117 0.11 -4.0 2,136,590 + EX28DRAFT_2117 0.11 -2.8 2,136,606 + EX28DRAFT_2117 0.12 -4.1 2,136,650 + EX28DRAFT_2117 0.15 -3.3 2,136,650 + EX28DRAFT_2117 0.15 -3.0 2,136,651 - EX28DRAFT_2117 0.15 -4.9 2,136,738 + EX28DRAFT_2117 0.22 -4.8 2,136,738 + EX28DRAFT_2117 0.22 -4.5 2,136,739 - EX28DRAFT_2117 0.22 -2.1 2,136,742 + EX28DRAFT_2117 0.22 -4.1 2,136,742 + EX28DRAFT_2117 0.22 -4.0 2,136,743 - EX28DRAFT_2117 0.22 -3.5 2,136,745 - EX28DRAFT_2117 0.23 -5.5 2,136,745 - EX28DRAFT_2117 0.23 -3.5 2,136,888 + EX28DRAFT_2117 0.34 -3.7 2,136,957 + EX28DRAFT_2117 0.39 -3.9 2,136,958 - EX28DRAFT_2117 0.39 -2.2 2,136,958 - EX28DRAFT_2117 0.39 -4.2 2,136,976 + EX28DRAFT_2117 0.40 -4.0 2,137,303 - EX28DRAFT_2117 0.66 -0.8 2,137,303 - EX28DRAFT_2117 0.66 -3.6 2,137,321 + EX28DRAFT_2117 0.67 -3.9 2,137,321 + EX28DRAFT_2117 0.67 -4.6 2,137,321 + EX28DRAFT_2117 0.67 -3.2 2,137,321 + EX28DRAFT_2117 0.67 -4.5 2,137,321 + EX28DRAFT_2117 0.67 -0.9 2,137,322 - EX28DRAFT_2117 0.67 -4.5 2,137,322 - EX28DRAFT_2117 0.67 -3.9 2,137,333 + EX28DRAFT_2117 0.68 -4.6 2,137,333 + EX28DRAFT_2117 0.68 -3.5 2,137,334 - EX28DRAFT_2117 0.68 -4.2 2,137,465 - EX28DRAFT_2117 0.78 -2.3 2,137,465 - EX28DRAFT_2117 0.78 -0.6 2,137,465 - EX28DRAFT_2117 0.78 -2.4 2,137,465 - EX28DRAFT_2117 0.78 -2.7 2,137,541 - EX28DRAFT_2117 0.84 -1.8 2,137,655 - -1.9 2,137,658 - -2.6 2,137,721 + -2.9 2,137,742 - -1.4 2,137,742 - -4.0 2,137,742 - -5.4 2,137,756 - -3.4 2,137,775 - -3.8 2,137,998 + EX28DRAFT_2118 0.56 -3.2 2,138,007 + EX28DRAFT_2118 0.58 -3.5 2,138,226 - -0.2 2,138,269 + -1.0 2,138,269 + -1.1 2,138,270 - -0.7 2,138,270 - -1.5 2,138,270 - -1.2 2,138,270 - -1.4 2,138,282 + +0.2 2,138,532 + EX28DRAFT_2119 0.29 -0.2 2,138,536 + EX28DRAFT_2119 0.30 -1.0 2,138,537 - EX28DRAFT_2119 0.30 -0.3 2,138,537 - EX28DRAFT_2119 0.30 +0.7 2,138,537 - EX28DRAFT_2119 0.30 -0.1 2,138,560 + EX28DRAFT_2119 0.33 -0.2 2,138,697 + EX28DRAFT_2119 0.51 -1.2 2,138,697 + EX28DRAFT_2119 0.51 +0.5 2,138,697 + EX28DRAFT_2119 0.51 +0.3 2,138,697 + EX28DRAFT_2119 0.51 -0.4 2,138,698 - EX28DRAFT_2119 0.51 -0.1 2,138,698 - EX28DRAFT_2119 0.51 -0.4 2,138,701 + EX28DRAFT_2119 0.51 -0.4 2,138,701 + EX28DRAFT_2119 0.51 -0.4 2,138,701 + EX28DRAFT_2119 0.51 +0.4
Or see this region's nucleotide sequence