Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2079

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2078 and EX28DRAFT_2079 are separated by 12 nucleotidesEX28DRAFT_2079 and EX28DRAFT_2080 are separated by 13 nucleotides EX28DRAFT_2078: EX28DRAFT_2078 - type II secretion system protein E, at 2,102,474 to 2,103,952 _2078 EX28DRAFT_2079: EX28DRAFT_2079 - type II secretion system protein D, at 2,103,965 to 2,105,890 _2079 EX28DRAFT_2080: EX28DRAFT_2080 - type II secretion system protein C, at 2,105,904 to 2,106,676 _2080 Position (kb) 2103 2104 2105 2106Strain fitness (log2 ratio) -2 -1 0 1at 2103.109 kb on - strand, within EX28DRAFT_2078at 2103.184 kb on + strand, within EX28DRAFT_2078at 2103.185 kb on - strand, within EX28DRAFT_2078at 2103.185 kb on - strand, within EX28DRAFT_2078at 2103.301 kb on + strand, within EX28DRAFT_2078at 2103.302 kb on - strand, within EX28DRAFT_2078at 2103.346 kb on - strand, within EX28DRAFT_2078at 2103.407 kb on - strand, within EX28DRAFT_2078at 2103.810 kb on + strandat 2103.810 kb on + strandat 2103.811 kb on - strandat 2103.849 kb on + strandat 2103.873 kb on + strandat 2103.873 kb on + strandat 2103.873 kb on + strandat 2103.873 kb on + strandat 2103.873 kb on + strandat 2103.874 kb on - strandat 2103.874 kb on - strandat 2103.874 kb on - strandat 2103.874 kb on - strandat 2103.888 kb on + strandat 2103.938 kb on - strandat 2104.070 kb on + strandat 2104.070 kb on + strandat 2104.128 kb on + strandat 2104.128 kb on + strandat 2104.129 kb on - strandat 2104.129 kb on - strandat 2104.153 kb on - strandat 2104.225 kb on + strand, within EX28DRAFT_2079at 2104.226 kb on - strand, within EX28DRAFT_2079at 2104.226 kb on - strand, within EX28DRAFT_2079at 2104.504 kb on + strand, within EX28DRAFT_2079at 2104.504 kb on + strand, within EX28DRAFT_2079at 2104.713 kb on + strand, within EX28DRAFT_2079at 2104.714 kb on - strand, within EX28DRAFT_2079at 2104.860 kb on - strand, within EX28DRAFT_2079at 2105.076 kb on + strand, within EX28DRAFT_2079at 2105.640 kb on + strand, within EX28DRAFT_2079at 2105.640 kb on + strand, within EX28DRAFT_2079at 2105.673 kb on + strand, within EX28DRAFT_2079at 2105.691 kb on - strand, within EX28DRAFT_2079at 2105.697 kb on + strand, within EX28DRAFT_2079at 2105.698 kb on - strandat 2105.698 kb on - strandat 2105.750 kb on - strandat 2105.753 kb on - strandat 2105.843 kb on + strandat 2105.896 kb on + strandat 2105.903 kb on - strandat 2106.051 kb on + strand, within EX28DRAFT_2080at 2106.107 kb on + strand, within EX28DRAFT_2080at 2106.142 kb on - strand, within EX28DRAFT_2080at 2106.183 kb on + strand, within EX28DRAFT_2080at 2106.428 kb on + strand, within EX28DRAFT_2080at 2106.744 kb on - strandat 2106.881 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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2,103,109 - EX28DRAFT_2078 0.43 +0.6
2,103,184 + EX28DRAFT_2078 0.48 -0.3
2,103,185 - EX28DRAFT_2078 0.48 +0.8
2,103,185 - EX28DRAFT_2078 0.48 +0.9
2,103,301 + EX28DRAFT_2078 0.56 -0.3
2,103,302 - EX28DRAFT_2078 0.56 +0.1
2,103,346 - EX28DRAFT_2078 0.59 +0.3
2,103,407 - EX28DRAFT_2078 0.63 +1.1
2,103,810 + -1.1
2,103,810 + +0.1
2,103,811 - -1.0
2,103,849 + -0.4
2,103,873 + -0.0
2,103,873 + -0.4
2,103,873 + -0.1
2,103,873 + +0.0
2,103,873 + -0.1
2,103,874 - -0.2
2,103,874 - +0.1
2,103,874 - -0.3
2,103,874 - +0.4
2,103,888 + +0.3
2,103,938 - +0.3
2,104,070 + +0.1
2,104,070 + -0.5
2,104,128 + -0.9
2,104,128 + -0.6
2,104,129 - +0.1
2,104,129 - +0.2
2,104,153 - -0.0
2,104,225 + EX28DRAFT_2079 0.13 +0.8
2,104,226 - EX28DRAFT_2079 0.14 -0.3
2,104,226 - EX28DRAFT_2079 0.14 -0.9
2,104,504 + EX28DRAFT_2079 0.28 -0.9
2,104,504 + EX28DRAFT_2079 0.28 -0.7
2,104,713 + EX28DRAFT_2079 0.39 -0.2
2,104,714 - EX28DRAFT_2079 0.39 -0.5
2,104,860 - EX28DRAFT_2079 0.46 -1.8
2,105,076 + EX28DRAFT_2079 0.58 +0.3
2,105,640 + EX28DRAFT_2079 0.87 -0.0
2,105,640 + EX28DRAFT_2079 0.87 -1.5
2,105,673 + EX28DRAFT_2079 0.89 +0.5
2,105,691 - EX28DRAFT_2079 0.90 -0.1
2,105,697 + EX28DRAFT_2079 0.90 -0.2
2,105,698 - -0.0
2,105,698 - -0.0
2,105,750 - +0.1
2,105,753 - -0.1
2,105,843 + +0.1
2,105,896 + +0.2
2,105,903 - -0.6
2,106,051 + EX28DRAFT_2080 0.19 +0.5
2,106,107 + EX28DRAFT_2080 0.26 -0.0
2,106,142 - EX28DRAFT_2080 0.31 -0.1
2,106,183 + EX28DRAFT_2080 0.36 -0.7
2,106,428 + EX28DRAFT_2080 0.68 -0.3
2,106,744 - +0.0
2,106,881 - -0.4

Or see this region's nucleotide sequence