Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2027 and EX28DRAFT_2028 are separated by 69 nucleotides EX28DRAFT_2028 and EX28DRAFT_2029 are separated by 198 nucleotides
EX28DRAFT_2027: EX28DRAFT_2027 - 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19), at 2,039,110 to 2,040,393
_2027
EX28DRAFT_2028: EX28DRAFT_2028 - phosphoserine aminotransferase apoenzyme (EC 2.6.1.52), at 2,040,463 to 2,041,515
_2028
EX28DRAFT_2029: EX28DRAFT_2029 - Predicted membrane protein, at 2,041,714 to 2,042,406
_2029
Position (kb)
2040
2041
2042 Strain fitness (log2 ratio)
-2
-1
0
1 at 2039.614 kb on + strand, within EX28DRAFT_2027 at 2039.795 kb on + strand, within EX28DRAFT_2027 at 2039.835 kb on + strand, within EX28DRAFT_2027 at 2039.922 kb on + strand, within EX28DRAFT_2027 at 2040.376 kb on + strand at 2040.418 kb on + strand at 2040.419 kb on - strand at 2041.584 kb on - strand at 2041.638 kb on + strand at 2041.639 kb on - strand at 2041.813 kb on - strand, within EX28DRAFT_2029 at 2041.813 kb on - strand, within EX28DRAFT_2029 at 2041.813 kb on - strand, within EX28DRAFT_2029 at 2041.820 kb on - strand, within EX28DRAFT_2029 at 2041.884 kb on + strand, within EX28DRAFT_2029 at 2041.916 kb on + strand, within EX28DRAFT_2029 at 2041.916 kb on + strand, within EX28DRAFT_2029 at 2041.916 kb on + strand, within EX28DRAFT_2029 at 2041.919 kb on + strand, within EX28DRAFT_2029 at 2041.920 kb on - strand, within EX28DRAFT_2029 at 2041.920 kb on - strand, within EX28DRAFT_2029 at 2041.996 kb on + strand, within EX28DRAFT_2029 at 2041.996 kb on + strand, within EX28DRAFT_2029 at 2042.025 kb on + strand, within EX28DRAFT_2029 at 2042.026 kb on - strand, within EX28DRAFT_2029 at 2042.038 kb on + strand, within EX28DRAFT_2029 at 2042.039 kb on - strand, within EX28DRAFT_2029 at 2042.149 kb on + strand, within EX28DRAFT_2029 at 2042.150 kb on - strand, within EX28DRAFT_2029 at 2042.201 kb on + strand, within EX28DRAFT_2029 at 2042.201 kb on + strand, within EX28DRAFT_2029 at 2042.202 kb on - strand, within EX28DRAFT_2029 at 2042.322 kb on + strand, within EX28DRAFT_2029 at 2042.322 kb on + strand, within EX28DRAFT_2029 at 2042.323 kb on - strand, within EX28DRAFT_2029 at 2042.323 kb on - strand, within EX28DRAFT_2029 at 2042.324 kb on + strand, within EX28DRAFT_2029 at 2042.324 kb on + strand, within EX28DRAFT_2029 at 2042.370 kb on + strand at 2042.419 kb on + strand at 2042.512 kb on - strand at 2042.512 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,039,614 + EX28DRAFT_2027 0.39 +0.0 2,039,795 + EX28DRAFT_2027 0.53 -2.6 2,039,835 + EX28DRAFT_2027 0.56 -1.4 2,039,922 + EX28DRAFT_2027 0.63 -1.9 2,040,376 + -1.3 2,040,418 + -1.9 2,040,419 - -1.4 2,041,584 - -0.4 2,041,638 + +0.4 2,041,639 - -0.1 2,041,813 - EX28DRAFT_2029 0.14 +0.9 2,041,813 - EX28DRAFT_2029 0.14 -0.2 2,041,813 - EX28DRAFT_2029 0.14 +0.9 2,041,820 - EX28DRAFT_2029 0.15 -0.3 2,041,884 + EX28DRAFT_2029 0.25 -0.1 2,041,916 + EX28DRAFT_2029 0.29 -0.1 2,041,916 + EX28DRAFT_2029 0.29 +0.2 2,041,916 + EX28DRAFT_2029 0.29 +0.2 2,041,919 + EX28DRAFT_2029 0.30 +0.1 2,041,920 - EX28DRAFT_2029 0.30 -0.1 2,041,920 - EX28DRAFT_2029 0.30 -0.0 2,041,996 + EX28DRAFT_2029 0.41 +0.1 2,041,996 + EX28DRAFT_2029 0.41 -0.1 2,042,025 + EX28DRAFT_2029 0.45 -0.3 2,042,026 - EX28DRAFT_2029 0.45 -0.6 2,042,038 + EX28DRAFT_2029 0.47 -0.6 2,042,039 - EX28DRAFT_2029 0.47 -1.6 2,042,149 + EX28DRAFT_2029 0.63 +0.2 2,042,150 - EX28DRAFT_2029 0.63 +0.9 2,042,201 + EX28DRAFT_2029 0.70 +1.0 2,042,201 + EX28DRAFT_2029 0.70 +0.0 2,042,202 - EX28DRAFT_2029 0.70 +0.5 2,042,322 + EX28DRAFT_2029 0.88 -0.0 2,042,322 + EX28DRAFT_2029 0.88 -0.8 2,042,323 - EX28DRAFT_2029 0.88 -0.8 2,042,323 - EX28DRAFT_2029 0.88 -0.3 2,042,324 + EX28DRAFT_2029 0.88 -0.0 2,042,324 + EX28DRAFT_2029 0.88 +0.1 2,042,370 + +0.2 2,042,419 + -0.9 2,042,512 - +0.3 2,042,512 - -0.0
Or see this region's nucleotide sequence