Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1981 and EX28DRAFT_1982 are separated by 123 nucleotides EX28DRAFT_1982 and EX28DRAFT_1983 are separated by 19 nucleotides
EX28DRAFT_1981: EX28DRAFT_1981 - Superfamily I DNA and RNA helicases, at 1,981,148 to 1,983,202
_1981
EX28DRAFT_1982: EX28DRAFT_1982 - Predicted membrane protein, at 1,983,326 to 1,983,772
_1982
EX28DRAFT_1983: EX28DRAFT_1983 - TIGR01666 family membrane protein, at 1,983,792 to 1,985,954
_1983
Position (kb) 1983
1984 Strain fitness (log2 ratio) -1
0
1 at 1982.359 kb on + strand, within EX28DRAFT_1981 at 1982.359 kb on + strand, within EX28DRAFT_1981 at 1982.360 kb on - strand, within EX28DRAFT_1981 at 1982.405 kb on - strand, within EX28DRAFT_1981 at 1982.632 kb on + strand, within EX28DRAFT_1981 at 1982.632 kb on + strand, within EX28DRAFT_1981 at 1982.701 kb on + strand, within EX28DRAFT_1981 at 1983.011 kb on - strand at 1983.091 kb on + strand at 1983.091 kb on + strand at 1983.091 kb on + strand at 1983.096 kb on + strand at 1983.097 kb on - strand at 1983.227 kb on - strand at 1983.227 kb on - strand at 1983.231 kb on + strand at 1983.256 kb on + strand at 1983.641 kb on - strand, within EX28DRAFT_1982 at 1983.775 kb on - strand at 1983.792 kb on - strand at 1983.818 kb on + strand at 1983.840 kb on + strand at 1983.840 kb on + strand at 1983.840 kb on + strand at 1983.840 kb on + strand at 1983.840 kb on + strand at 1983.841 kb on - strand at 1983.841 kb on - strand at 1983.853 kb on + strand at 1983.857 kb on + strand at 1984.076 kb on + strand, within EX28DRAFT_1983 at 1984.098 kb on - strand, within EX28DRAFT_1983 at 1984.098 kb on - strand, within EX28DRAFT_1983 at 1984.164 kb on + strand, within EX28DRAFT_1983 at 1984.164 kb on + strand, within EX28DRAFT_1983 at 1984.165 kb on - strand, within EX28DRAFT_1983 at 1984.165 kb on - strand, within EX28DRAFT_1983 at 1984.165 kb on - strand, within EX28DRAFT_1983 at 1984.239 kb on + strand, within EX28DRAFT_1983 at 1984.240 kb on - strand, within EX28DRAFT_1983 at 1984.240 kb on - strand, within EX28DRAFT_1983 at 1984.242 kb on - strand, within EX28DRAFT_1983 at 1984.393 kb on - strand, within EX28DRAFT_1983 at 1984.505 kb on - strand, within EX28DRAFT_1983 at 1984.505 kb on - strand, within EX28DRAFT_1983 at 1984.505 kb on - strand, within EX28DRAFT_1983 at 1984.510 kb on - strand, within EX28DRAFT_1983 at 1984.510 kb on - strand, within EX28DRAFT_1983 at 1984.513 kb on - strand, within EX28DRAFT_1983 at 1984.677 kb on - strand, within EX28DRAFT_1983
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,982,359 + EX28DRAFT_1981 0.59 -0.4 1,982,359 + EX28DRAFT_1981 0.59 -0.7 1,982,360 - EX28DRAFT_1981 0.59 +0.2 1,982,405 - EX28DRAFT_1981 0.61 +0.6 1,982,632 + EX28DRAFT_1981 0.72 -0.1 1,982,632 + EX28DRAFT_1981 0.72 +0.2 1,982,701 + EX28DRAFT_1981 0.76 +0.1 1,983,011 - -0.3 1,983,091 + -0.5 1,983,091 + -0.4 1,983,091 + +0.2 1,983,096 + +0.5 1,983,097 - +0.3 1,983,227 - -0.7 1,983,227 - +0.2 1,983,231 + +0.2 1,983,256 + +0.6 1,983,641 - EX28DRAFT_1982 0.70 -0.2 1,983,775 - -1.0 1,983,792 - +1.1 1,983,818 + +0.1 1,983,840 + -0.2 1,983,840 + -0.4 1,983,840 + -0.3 1,983,840 + -0.1 1,983,840 + -0.4 1,983,841 - +1.4 1,983,841 - +0.0 1,983,853 + -0.2 1,983,857 + +0.1 1,984,076 + EX28DRAFT_1983 0.13 +0.9 1,984,098 - EX28DRAFT_1983 0.14 -0.4 1,984,098 - EX28DRAFT_1983 0.14 -0.3 1,984,164 + EX28DRAFT_1983 0.17 +0.2 1,984,164 + EX28DRAFT_1983 0.17 -0.6 1,984,165 - EX28DRAFT_1983 0.17 -1.5 1,984,165 - EX28DRAFT_1983 0.17 +0.1 1,984,165 - EX28DRAFT_1983 0.17 -0.2 1,984,239 + EX28DRAFT_1983 0.21 -0.5 1,984,240 - EX28DRAFT_1983 0.21 +0.3 1,984,240 - EX28DRAFT_1983 0.21 -0.2 1,984,242 - EX28DRAFT_1983 0.21 -0.1 1,984,393 - EX28DRAFT_1983 0.28 -0.8 1,984,505 - EX28DRAFT_1983 0.33 -1.4 1,984,505 - EX28DRAFT_1983 0.33 -1.6 1,984,505 - EX28DRAFT_1983 0.33 +0.3 1,984,510 - EX28DRAFT_1983 0.33 +0.8 1,984,510 - EX28DRAFT_1983 0.33 -0.6 1,984,513 - EX28DRAFT_1983 0.33 -0.9 1,984,677 - EX28DRAFT_1983 0.41 -0.3
Or see this region's nucleotide sequence