Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1866

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_1864 and EX28DRAFT_1865 are separated by 2 nucleotidesEX28DRAFT_1865 and EX28DRAFT_1866 are separated by 9 nucleotidesEX28DRAFT_1866 and EX28DRAFT_1867 are separated by 236 nucleotides EX28DRAFT_1864: EX28DRAFT_1864 - Predicted dehydrogenases and related proteins, at 1,878,581 to 1,879,504 _1864 EX28DRAFT_1865: EX28DRAFT_1865 - Uncharacterized protein conserved in bacteria, at 1,879,507 to 1,880,163 _1865 EX28DRAFT_1866: EX28DRAFT_1866 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 1,880,173 to 1,880,757 _1866 EX28DRAFT_1867: EX28DRAFT_1867 - Arabinose efflux permease, at 1,880,994 to 1,882,202 _1867 Position (kb) 1880 1881Strain fitness (log2 ratio) -2 -1 0 1at 1879.294 kb on + strand, within EX28DRAFT_1864at 1879.295 kb on - strand, within EX28DRAFT_1864at 1879.295 kb on - strand, within EX28DRAFT_1864at 1879.372 kb on + strand, within EX28DRAFT_1864at 1879.372 kb on + strand, within EX28DRAFT_1864at 1879.372 kb on + strand, within EX28DRAFT_1864at 1879.372 kb on + strand, within EX28DRAFT_1864at 1879.436 kb on + strandat 1879.674 kb on + strand, within EX28DRAFT_1865at 1879.675 kb on - strand, within EX28DRAFT_1865at 1879.675 kb on - strand, within EX28DRAFT_1865at 1879.676 kb on + strand, within EX28DRAFT_1865at 1879.677 kb on - strand, within EX28DRAFT_1865at 1879.922 kb on + strand, within EX28DRAFT_1865at 1880.157 kb on - strandat 1880.157 kb on - strandat 1880.157 kb on - strandat 1880.250 kb on - strand, within EX28DRAFT_1866at 1880.322 kb on + strand, within EX28DRAFT_1866at 1880.323 kb on - strand, within EX28DRAFT_1866at 1880.324 kb on + strand, within EX28DRAFT_1866at 1880.324 kb on + strand, within EX28DRAFT_1866at 1880.324 kb on + strand, within EX28DRAFT_1866at 1880.325 kb on - strand, within EX28DRAFT_1866at 1880.347 kb on - strand, within EX28DRAFT_1866at 1880.364 kb on + strand, within EX28DRAFT_1866at 1880.364 kb on + strand, within EX28DRAFT_1866at 1880.364 kb on + strand, within EX28DRAFT_1866at 1880.364 kb on + strand, within EX28DRAFT_1866at 1880.365 kb on - strand, within EX28DRAFT_1866at 1880.365 kb on - strand, within EX28DRAFT_1866at 1880.394 kb on - strand, within EX28DRAFT_1866at 1880.442 kb on - strand, within EX28DRAFT_1866at 1880.529 kb on - strand, within EX28DRAFT_1866at 1880.529 kb on - strand, within EX28DRAFT_1866at 1880.658 kb on - strand, within EX28DRAFT_1866at 1880.795 kb on - strandat 1880.801 kb on - strandat 1880.801 kb on - strandat 1880.803 kb on + strandat 1880.803 kb on + strandat 1880.803 kb on + strandat 1880.841 kb on - strandat 1880.976 kb on - strandat 1881.030 kb on + strandat 1881.131 kb on - strand, within EX28DRAFT_1867at 1881.474 kb on + strand, within EX28DRAFT_1867at 1881.515 kb on + strand, within EX28DRAFT_1867at 1881.630 kb on + strand, within EX28DRAFT_1867at 1881.630 kb on + strand, within EX28DRAFT_1867at 1881.631 kb on - strand, within EX28DRAFT_1867at 1881.631 kb on - strand, within EX28DRAFT_1867at 1881.631 kb on - strand, within EX28DRAFT_1867at 1881.631 kb on - strand, within EX28DRAFT_1867at 1881.631 kb on - strand, within EX28DRAFT_1867at 1881.631 kb on - strand, within EX28DRAFT_1867at 1881.654 kb on + strand, within EX28DRAFT_1867at 1881.654 kb on + strand, within EX28DRAFT_1867at 1881.654 kb on + strand, within EX28DRAFT_1867at 1881.654 kb on + strand, within EX28DRAFT_1867at 1881.655 kb on - strand, within EX28DRAFT_1867at 1881.655 kb on - strand, within EX28DRAFT_1867at 1881.655 kb on - strand, within EX28DRAFT_1867at 1881.728 kb on + strand, within EX28DRAFT_1867at 1881.738 kb on + strand, within EX28DRAFT_1867at 1881.738 kb on + strand, within EX28DRAFT_1867at 1881.739 kb on - strand, within EX28DRAFT_1867

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
1,879,294 + EX28DRAFT_1864 0.77 +0.2
1,879,295 - EX28DRAFT_1864 0.77 -0.0
1,879,295 - EX28DRAFT_1864 0.77 +0.7
1,879,372 + EX28DRAFT_1864 0.86 +0.4
1,879,372 + EX28DRAFT_1864 0.86 -1.1
1,879,372 + EX28DRAFT_1864 0.86 -0.1
1,879,372 + EX28DRAFT_1864 0.86 -1.0
1,879,436 + +0.2
1,879,674 + EX28DRAFT_1865 0.25 -0.3
1,879,675 - EX28DRAFT_1865 0.26 +0.4
1,879,675 - EX28DRAFT_1865 0.26 -0.5
1,879,676 + EX28DRAFT_1865 0.26 -0.3
1,879,677 - EX28DRAFT_1865 0.26 -0.9
1,879,922 + EX28DRAFT_1865 0.63 -0.7
1,880,157 - +0.3
1,880,157 - -0.1
1,880,157 - -0.1
1,880,250 - EX28DRAFT_1866 0.13 -1.9
1,880,322 + EX28DRAFT_1866 0.25 -0.4
1,880,323 - EX28DRAFT_1866 0.26 -1.2
1,880,324 + EX28DRAFT_1866 0.26 +0.4
1,880,324 + EX28DRAFT_1866 0.26 -1.2
1,880,324 + EX28DRAFT_1866 0.26 -0.1
1,880,325 - EX28DRAFT_1866 0.26 -0.7
1,880,347 - EX28DRAFT_1866 0.30 -0.7
1,880,364 + EX28DRAFT_1866 0.33 +0.5
1,880,364 + EX28DRAFT_1866 0.33 -0.2
1,880,364 + EX28DRAFT_1866 0.33 +1.2
1,880,364 + EX28DRAFT_1866 0.33 -0.3
1,880,365 - EX28DRAFT_1866 0.33 -0.1
1,880,365 - EX28DRAFT_1866 0.33 -0.5
1,880,394 - EX28DRAFT_1866 0.38 -0.3
1,880,442 - EX28DRAFT_1866 0.46 -1.0
1,880,529 - EX28DRAFT_1866 0.61 -0.4
1,880,529 - EX28DRAFT_1866 0.61 +0.1
1,880,658 - EX28DRAFT_1866 0.83 -0.2
1,880,795 - -0.0
1,880,801 - +0.5
1,880,801 - +0.5
1,880,803 + +0.8
1,880,803 + +0.3
1,880,803 + -1.0
1,880,841 - -0.2
1,880,976 - +0.5
1,881,030 + -0.2
1,881,131 - EX28DRAFT_1867 0.11 -0.1
1,881,474 + EX28DRAFT_1867 0.40 +0.3
1,881,515 + EX28DRAFT_1867 0.43 -1.1
1,881,630 + EX28DRAFT_1867 0.53 -0.9
1,881,630 + EX28DRAFT_1867 0.53 +1.2
1,881,631 - EX28DRAFT_1867 0.53 +0.5
1,881,631 - EX28DRAFT_1867 0.53 +0.3
1,881,631 - EX28DRAFT_1867 0.53 -0.9
1,881,631 - EX28DRAFT_1867 0.53 +0.2
1,881,631 - EX28DRAFT_1867 0.53 +0.3
1,881,631 - EX28DRAFT_1867 0.53 +0.7
1,881,654 + EX28DRAFT_1867 0.55 -0.2
1,881,654 + EX28DRAFT_1867 0.55 -0.1
1,881,654 + EX28DRAFT_1867 0.55 -0.1
1,881,654 + EX28DRAFT_1867 0.55 +0.3
1,881,655 - EX28DRAFT_1867 0.55 +0.1
1,881,655 - EX28DRAFT_1867 0.55 -0.2
1,881,655 - EX28DRAFT_1867 0.55 -0.9
1,881,728 + EX28DRAFT_1867 0.61 -1.9
1,881,738 + EX28DRAFT_1867 0.62 -1.0
1,881,738 + EX28DRAFT_1867 0.62 -0.5
1,881,739 - EX28DRAFT_1867 0.62 +0.1

Or see this region's nucleotide sequence