Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1837 and EX28DRAFT_1838 are separated by 15 nucleotides EX28DRAFT_1838 and EX28DRAFT_1839 are separated by 6 nucleotides EX28DRAFT_1839 and EX28DRAFT_1840 are separated by 110 nucleotides EX28DRAFT_1840 and EX28DRAFT_1841 are separated by 16 nucleotides EX28DRAFT_1841 and EX28DRAFT_1842 are separated by 36 nucleotides
EX28DRAFT_1837: EX28DRAFT_1837 - malonyl CoA-acyl carrier protein transacylase, at 1,853,776 to 1,854,705
_1837
EX28DRAFT_1838: EX28DRAFT_1838 - 3-oxoacyl-(acyl-carrier-protein) synthase III, at 1,854,721 to 1,855,674
_1838
EX28DRAFT_1839: EX28DRAFT_1839 - phosphate:acyl-[acyl carrier protein] acyltransferase, at 1,855,681 to 1,856,685
_1839
EX28DRAFT_1840: EX28DRAFT_1840 - ribosomal protein L32, at 1,856,796 to 1,856,969
_1840
EX28DRAFT_1841: EX28DRAFT_1841 - Predicted metal-binding, possibly nucleic acid-binding protein, at 1,856,986 to 1,857,507
_1841
EX28DRAFT_1842: EX28DRAFT_1842 - RNA, at 1,857,544 to 1,857,654
_1842
Position (kb)
1855
1856
1857 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1854.718 kb on - strand at 1854.878 kb on - strand, within EX28DRAFT_1838 at 1854.928 kb on - strand, within EX28DRAFT_1838 at 1854.928 kb on - strand, within EX28DRAFT_1838 at 1855.103 kb on - strand, within EX28DRAFT_1838 at 1855.594 kb on - strand at 1855.669 kb on - strand at 1855.671 kb on - strand at 1855.671 kb on - strand at 1855.671 kb on - strand at 1855.677 kb on - strand at 1855.677 kb on - strand at 1855.677 kb on - strand at 1855.677 kb on - strand at 1855.851 kb on - strand, within EX28DRAFT_1839 at 1855.851 kb on - strand, within EX28DRAFT_1839 at 1856.082 kb on + strand, within EX28DRAFT_1839 at 1856.083 kb on - strand, within EX28DRAFT_1839 at 1856.084 kb on + strand, within EX28DRAFT_1839 at 1856.084 kb on + strand, within EX28DRAFT_1839 at 1856.085 kb on - strand, within EX28DRAFT_1839 at 1856.247 kb on + strand, within EX28DRAFT_1839 at 1856.247 kb on + strand, within EX28DRAFT_1839 at 1856.248 kb on - strand, within EX28DRAFT_1839 at 1856.250 kb on + strand, within EX28DRAFT_1839 at 1856.353 kb on - strand, within EX28DRAFT_1839 at 1856.458 kb on - strand, within EX28DRAFT_1839 at 1856.472 kb on + strand, within EX28DRAFT_1839 at 1856.719 kb on - strand at 1857.430 kb on - strand, within EX28DRAFT_1841 at 1857.538 kb on - strand at 1857.579 kb on + strand, within EX28DRAFT_1842 at 1857.602 kb on - strand, within EX28DRAFT_1842 at 1857.629 kb on + strand, within EX28DRAFT_1842 at 1857.630 kb on - strand, within EX28DRAFT_1842 at 1857.632 kb on - strand, within EX28DRAFT_1842 at 1857.632 kb on - strand, within EX28DRAFT_1842
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,854,718 - +0.4 1,854,878 - EX28DRAFT_1838 0.16 -1.0 1,854,928 - EX28DRAFT_1838 0.22 +0.1 1,854,928 - EX28DRAFT_1838 0.22 +0.1 1,855,103 - EX28DRAFT_1838 0.40 -0.7 1,855,594 - -0.8 1,855,669 - -2.0 1,855,671 - +0.1 1,855,671 - +1.9 1,855,671 - -0.6 1,855,677 - +0.5 1,855,677 - -0.1 1,855,677 - -1.0 1,855,677 - -0.1 1,855,851 - EX28DRAFT_1839 0.17 -1.1 1,855,851 - EX28DRAFT_1839 0.17 -1.6 1,856,082 + EX28DRAFT_1839 0.40 -1.9 1,856,083 - EX28DRAFT_1839 0.40 -1.7 1,856,084 + EX28DRAFT_1839 0.40 -2.1 1,856,084 + EX28DRAFT_1839 0.40 -0.9 1,856,085 - EX28DRAFT_1839 0.40 -0.7 1,856,247 + EX28DRAFT_1839 0.56 +0.1 1,856,247 + EX28DRAFT_1839 0.56 -0.4 1,856,248 - EX28DRAFT_1839 0.56 -0.3 1,856,250 + EX28DRAFT_1839 0.57 -3.6 1,856,353 - EX28DRAFT_1839 0.67 -0.1 1,856,458 - EX28DRAFT_1839 0.77 -0.7 1,856,472 + EX28DRAFT_1839 0.79 +1.5 1,856,719 - -0.3 1,857,430 - EX28DRAFT_1841 0.85 +0.1 1,857,538 - -0.4 1,857,579 + EX28DRAFT_1842 0.32 -1.3 1,857,602 - EX28DRAFT_1842 0.52 +0.4 1,857,629 + EX28DRAFT_1842 0.77 +0.2 1,857,630 - EX28DRAFT_1842 0.77 -0.5 1,857,632 - EX28DRAFT_1842 0.79 +0.3 1,857,632 - EX28DRAFT_1842 0.79 +0.0
Or see this region's nucleotide sequence