Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1782 and EX28DRAFT_1783 are separated by 101 nucleotides EX28DRAFT_1783 and EX28DRAFT_1784 are separated by 0 nucleotides EX28DRAFT_1784 and EX28DRAFT_1785 are separated by 80 nucleotides EX28DRAFT_1785 and EX28DRAFT_1786 are separated by 268 nucleotides
EX28DRAFT_1782: EX28DRAFT_1782 - Glutamine amidotransferase class-I, at 1,798,303 to 1,799,010
_1782
EX28DRAFT_1783: EX28DRAFT_1783 - Uncharacterized conserved protein, at 1,799,112 to 1,799,456
_1783
EX28DRAFT_1784: EX28DRAFT_1784 - hypothetical protein, at 1,799,457 to 1,799,762
_1784
EX28DRAFT_1785: EX28DRAFT_1785 - Putative hemolysin, at 1,799,843 to 1,800,097
_1785
EX28DRAFT_1786: EX28DRAFT_1786 - diguanylate cyclase (GGDEF) domain, at 1,800,366 to 1,801,436
_1786
Position (kb)
1799
1800 Strain fitness (log2 ratio)
-1
0
1
2 at 1798.461 kb on + strand, within EX28DRAFT_1782 at 1798.462 kb on - strand, within EX28DRAFT_1782 at 1798.462 kb on - strand, within EX28DRAFT_1782 at 1798.506 kb on - strand, within EX28DRAFT_1782 at 1798.506 kb on - strand, within EX28DRAFT_1782 at 1798.506 kb on - strand, within EX28DRAFT_1782 at 1798.506 kb on - strand, within EX28DRAFT_1782 at 1798.506 kb on - strand, within EX28DRAFT_1782 at 1798.506 kb on - strand, within EX28DRAFT_1782 at 1798.509 kb on + strand, within EX28DRAFT_1782 at 1798.510 kb on - strand, within EX28DRAFT_1782 at 1798.510 kb on - strand, within EX28DRAFT_1782 at 1798.564 kb on - strand, within EX28DRAFT_1782 at 1798.691 kb on + strand, within EX28DRAFT_1782 at 1798.691 kb on + strand, within EX28DRAFT_1782 at 1798.792 kb on - strand, within EX28DRAFT_1782 at 1798.794 kb on - strand, within EX28DRAFT_1782 at 1798.944 kb on + strand at 1798.959 kb on - strand at 1799.035 kb on + strand at 1799.036 kb on - strand at 1799.048 kb on - strand at 1799.048 kb on - strand at 1799.048 kb on - strand at 1799.092 kb on + strand at 1799.092 kb on + strand at 1799.111 kb on + strand at 1799.112 kb on - strand at 1799.112 kb on - strand at 1799.132 kb on - strand at 1799.133 kb on + strand at 1799.257 kb on + strand, within EX28DRAFT_1783 at 1799.258 kb on - strand, within EX28DRAFT_1783 at 1799.258 kb on - strand, within EX28DRAFT_1783 at 1799.262 kb on - strand, within EX28DRAFT_1783 at 1799.313 kb on - strand, within EX28DRAFT_1783 at 1799.392 kb on - strand, within EX28DRAFT_1783 at 1799.428 kb on + strand at 1799.429 kb on - strand at 1799.688 kb on - strand, within EX28DRAFT_1784 at 1799.750 kb on + strand at 1799.750 kb on + strand at 1799.762 kb on + strand at 1799.763 kb on - strand at 1799.763 kb on - strand at 1799.763 kb on - strand at 1799.803 kb on + strand at 1799.809 kb on + strand at 1799.810 kb on - strand at 1799.833 kb on + strand at 1799.835 kb on + strand at 1799.835 kb on + strand at 1799.835 kb on + strand at 1799.835 kb on + strand at 1799.835 kb on + strand at 1799.835 kb on + strand at 1799.835 kb on + strand at 1799.836 kb on - strand at 1799.836 kb on - strand at 1799.836 kb on - strand at 1799.836 kb on - strand at 1799.836 kb on - strand at 1799.927 kb on + strand, within EX28DRAFT_1785 at 1800.001 kb on + strand, within EX28DRAFT_1785 at 1800.128 kb on + strand at 1800.192 kb on + strand at 1800.192 kb on + strand at 1800.192 kb on + strand at 1800.194 kb on + strand at 1800.194 kb on + strand at 1800.194 kb on + strand at 1800.306 kb on + strand at 1800.307 kb on - strand at 1800.362 kb on + strand at 1800.362 kb on + strand at 1800.362 kb on + strand at 1800.402 kb on + strand at 1800.403 kb on - strand at 1800.419 kb on + strand at 1800.420 kb on - strand at 1800.526 kb on - strand, within EX28DRAFT_1786 at 1800.538 kb on + strand, within EX28DRAFT_1786 at 1800.538 kb on + strand, within EX28DRAFT_1786 at 1800.538 kb on + strand, within EX28DRAFT_1786 at 1800.538 kb on + strand, within EX28DRAFT_1786 at 1800.538 kb on + strand, within EX28DRAFT_1786 at 1800.539 kb on - strand, within EX28DRAFT_1786 at 1800.539 kb on - strand, within EX28DRAFT_1786 at 1800.539 kb on - strand, within EX28DRAFT_1786 at 1800.539 kb on - strand, within EX28DRAFT_1786 at 1800.563 kb on + strand, within EX28DRAFT_1786 at 1800.570 kb on + strand, within EX28DRAFT_1786 at 1800.665 kb on - strand, within EX28DRAFT_1786 at 1800.732 kb on + strand, within EX28DRAFT_1786 at 1800.732 kb on + strand, within EX28DRAFT_1786
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,798,461 + EX28DRAFT_1782 0.22 -0.5 1,798,462 - EX28DRAFT_1782 0.22 -1.1 1,798,462 - EX28DRAFT_1782 0.22 -0.0 1,798,506 - EX28DRAFT_1782 0.29 +0.1 1,798,506 - EX28DRAFT_1782 0.29 -0.2 1,798,506 - EX28DRAFT_1782 0.29 -0.6 1,798,506 - EX28DRAFT_1782 0.29 +1.1 1,798,506 - EX28DRAFT_1782 0.29 +0.5 1,798,506 - EX28DRAFT_1782 0.29 -0.8 1,798,509 + EX28DRAFT_1782 0.29 +1.8 1,798,510 - EX28DRAFT_1782 0.29 -1.1 1,798,510 - EX28DRAFT_1782 0.29 +0.3 1,798,564 - EX28DRAFT_1782 0.37 +0.1 1,798,691 + EX28DRAFT_1782 0.55 -0.4 1,798,691 + EX28DRAFT_1782 0.55 -0.4 1,798,792 - EX28DRAFT_1782 0.69 -0.5 1,798,794 - EX28DRAFT_1782 0.69 -0.0 1,798,944 + -0.3 1,798,959 - +0.8 1,799,035 + +0.1 1,799,036 - +1.3 1,799,048 - +1.2 1,799,048 - +0.3 1,799,048 - +0.5 1,799,092 + -0.4 1,799,092 + +0.2 1,799,111 + -1.4 1,799,112 - +0.0 1,799,112 - +0.3 1,799,132 - +0.8 1,799,133 + +0.3 1,799,257 + EX28DRAFT_1783 0.42 -1.0 1,799,258 - EX28DRAFT_1783 0.42 +0.3 1,799,258 - EX28DRAFT_1783 0.42 -0.0 1,799,262 - EX28DRAFT_1783 0.43 -0.0 1,799,313 - EX28DRAFT_1783 0.58 -0.5 1,799,392 - EX28DRAFT_1783 0.81 +1.2 1,799,428 + +1.1 1,799,429 - -0.5 1,799,688 - EX28DRAFT_1784 0.75 -0.5 1,799,750 + +0.2 1,799,750 + -1.1 1,799,762 + -0.1 1,799,763 - +0.3 1,799,763 - -0.1 1,799,763 - +0.2 1,799,803 + -0.1 1,799,809 + -0.7 1,799,810 - +0.4 1,799,833 + -0.2 1,799,835 + -1.2 1,799,835 + +0.4 1,799,835 + -0.0 1,799,835 + +0.6 1,799,835 + +0.2 1,799,835 + +1.1 1,799,835 + -0.2 1,799,836 - -0.6 1,799,836 - -0.5 1,799,836 - +0.2 1,799,836 - -0.3 1,799,836 - -0.3 1,799,927 + EX28DRAFT_1785 0.33 -0.8 1,800,001 + EX28DRAFT_1785 0.62 -1.0 1,800,128 + +0.4 1,800,192 + +0.4 1,800,192 + +0.2 1,800,192 + -0.5 1,800,194 + +0.2 1,800,194 + -1.3 1,800,194 + -1.5 1,800,306 + -0.3 1,800,307 - +0.2 1,800,362 + +0.2 1,800,362 + +0.8 1,800,362 + +0.1 1,800,402 + -0.1 1,800,403 - +0.1 1,800,419 + -0.3 1,800,420 - -0.6 1,800,526 - EX28DRAFT_1786 0.15 +0.0 1,800,538 + EX28DRAFT_1786 0.16 +0.3 1,800,538 + EX28DRAFT_1786 0.16 +0.7 1,800,538 + EX28DRAFT_1786 0.16 +0.2 1,800,538 + EX28DRAFT_1786 0.16 +1.0 1,800,538 + EX28DRAFT_1786 0.16 -0.4 1,800,539 - EX28DRAFT_1786 0.16 -0.9 1,800,539 - EX28DRAFT_1786 0.16 -0.3 1,800,539 - EX28DRAFT_1786 0.16 -0.6 1,800,539 - EX28DRAFT_1786 0.16 +0.1 1,800,563 + EX28DRAFT_1786 0.18 +1.9 1,800,570 + EX28DRAFT_1786 0.19 +0.0 1,800,665 - EX28DRAFT_1786 0.28 -0.2 1,800,732 + EX28DRAFT_1786 0.34 +0.3 1,800,732 + EX28DRAFT_1786 0.34 -0.7
Or see this region's nucleotide sequence